Variant report

Variant	rs11637785
Chromosome Location	chr15:75944435-75944436
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SRF	chr15:75944386-75945032	MCF-7	breast:	n/a	chr15:75944715-75944733
2	SRF	chr15:75944285-75945145	MCF-7	breast:	n/a	chr15:75944715-75944733
3	ZNF384	chr15:75944250-75944472	K562	blood:	n/a	n/a
4	ZNF143	chr15:75944420-75944506	K562	blood:	n/a	n/a
5	NR2F2	chr15:75943179-75944454	K562	blood:	n/a	n/a
6	JUN	chr15:75942579-75944921	K562	blood:	n/a	chr15:75943849-75943858 chr15:75943849-75943856 chr15:75943850-75943861 chr15:75943848-75943857 chr15:75943847-75943859 chr15:75943849-75943857
7	RCOR1	chr15:75944385-75944617	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:75744565..75747167-chr15:75943528..75946295,2	MCF-7	breast:
2	chr15:75658936..75661211-chr15:75942331..75944874,2	K562	blood:
3	chr15:75745693..75748489-chr15:75943687..75945944,2	MCF-7	breast:
4	chr15:75914032..75916451-chr15:75943041..75945387,2	MCF-7	breast:
5	chr15:75659426..75662250-chr15:75944207..75945953,2	MCF-7	breast:
6	chr15:75943051..75945736-chr15:75963392..75964991,2	MCF-7	breast:
7	chr15:75743569..75745399-chr15:75943174..75945692,2	K562	blood:

Variant related genes	Relation type
IMP3	TF binding region
ENSG00000140400	Chromatin interaction
ENSG00000169375	Chromatin interaction
ENSG00000260274	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11632887	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11638663	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62027227	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531901	chr15:75600108-76019966	Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	esv3445070	chr15:75623136-76045948	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv530345	chr15:75628556-75951011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
4	nsv1048028	chr15:75637515-76019967	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
5	nsv542436	chr15:75637515-76019967	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	161 gene(s)	inside rSNPs	diseases
6	esv1800424	chr15:75692303-75991451	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
7	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
8	esv1813854	chr15:75898640-76002392	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
9	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
10	nsv904391	chr15:75930757-76001654	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
11	nsv904392	chr15:75930757-76039262	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
12	nsv904393	chr15:75932177-76001654	Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
13	nsv984485	chr15:75932760-75965433	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75941200-75944600	Enhancers	Fetal Heart	heart
2	chr15:75941200-75945200	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:75941200-75946200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:75941200-75946200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:75941400-75944600	Weak transcription	Fetal Brain Male	brain
6	chr15:75941400-75945000	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
7	chr15:75941400-75945200	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
8	chr15:75941400-75945200	Transcr. at gene 5' and 3'	NHLF	lung
9	chr15:75941400-75946000	Flanking Active TSS	HepG2	liver
10	chr15:75941400-75946200	Transcr. at gene 5' and 3'	Esophagus	oesophagus
11	chr15:75941600-75945000	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:75941600-75945400	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:75941600-75946000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:75941600-75946200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:75941800-75946200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:75941800-75946200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:75941800-75946200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
18	chr15:75941800-75947200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:75941800-75953200	Weak transcription	Fetal Brain Female	brain
20	chr15:75942000-75946200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:75942000-75947800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:75942200-75945800	Enhancers	Small Intestine	intestine
23	chr15:75942200-75946000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr15:75942200-75946000	Genic enhancers	Placenta	Placenta
25	chr15:75942400-75944800	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:75942600-75944600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr15:75942600-75945600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:75942600-75946200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr15:75942600-75946200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:75942800-75944600	Active TSS	Psoas Muscle	Psoas
31	chr15:75942800-75945000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr15:75942800-75945400	Flanking Active TSS	Hela-S3	cervix
33	chr15:75942800-75946000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:75943000-75945000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:75943000-75945000	Flanking Active TSS	Pancreas	Pancrea
36	chr15:75943000-75945000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr15:75943200-75945000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:75943200-75945200	Flanking Active TSS	Rectal Smooth Muscle	rectum
39	chr15:75943400-75944600	Flanking Active TSS	Liver	Liver
40	chr15:75943400-75944800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:75943400-75944800	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr15:75943400-75944800	Flanking Active TSS	Colon Smooth Muscle	Colon
43	chr15:75943400-75944800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr15:75943400-75945000	Enhancers	Primary T cells fromperipheralblood	blood
45	chr15:75943400-75945000	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr15:75943400-75945000	Flanking Active TSS	HMEC	breast
47	chr15:75943400-75945000	Flanking Active TSS	K562	blood
48	chr15:75943400-75945200	Active TSS	Aorta	Aorta
49	chr15:75943400-75945200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
50	chr15:75943600-75944600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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