Variant report

Variant	rs11639089
Chromosome Location	chr15:83653863-83653864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HCFC1	chr15:83653757-83655697	Hela-S3	cervix:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:83653840..83656336-chr16:14164975..14167418,2	MCF-7	breast:
2	chr15:83619377..83622023-chr15:83652376..83655486,3	MCF-7	breast:
3	chr15:83648429..83650845-chr15:83651784..83654033,2	K562	blood:
4	chr15:83417301..83420117-chr15:83653856..83657124,3	MCF-7	breast:
5	chr15:83516636..83518900-chr15:83652080..83654405,2	MCF-7	breast:
6	chr15:83517113..83521654-chr15:83652714..83657006,7	MCF-7	breast:
7	chr15:83652926..83655970-chr15:83874776..83878125,3	MCF-7	breast:
8	chr15:83648429..83650791-chr15:83651784..83654037,2	K562	blood:

No data

Variant related genes	Relation type
FAM103A1	TF binding region
ENSG00000250988	Chromatin interaction
ENSG00000103942	Chromatin interaction
ENSG00000166503	Chromatin interaction
ENSG00000186260	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11629943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631247	1.00[AMR][1000 genomes]
rs11634603	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040336	chr15:83578947-83768335	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv482308	chr15:83584918-83747362	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83635800-83654000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:83640200-83654000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:83640600-83654000	Weak transcription	HSMMtube	muscle
4	chr15:83640800-83654000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:83641200-83654200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:83642200-83654000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:83644400-83654000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:83644600-83654000	Weak transcription	Primary B cells from cord blood	blood
9	chr15:83644800-83654000	Weak transcription	A549	lung
10	chr15:83645400-83654000	Weak transcription	Brain Anterior Caudate	brain
11	chr15:83645800-83654200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:83646400-83654000	Weak transcription	K562	blood
13	chr15:83647600-83654000	Weak transcription	Lung	lung
14	chr15:83647800-83654000	Weak transcription	Thymus	Thymus
15	chr15:83648200-83654000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:83649200-83654200	Weak transcription	Placenta	Placenta
17	chr15:83649400-83654000	Weak transcription	HMEC	breast
18	chr15:83649800-83654000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr15:83650000-83654200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:83650600-83654000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:83650600-83654000	Weak transcription	Fetal Thymus	thymus
22	chr15:83651800-83654000	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:83652200-83654000	Weak transcription	Fetal Intestine Small	intestine
24	chr15:83652200-83654000	Weak transcription	Fetal Stomach	stomach
25	chr15:83653200-83654200	Enhancers	Esophagus	oesophagus
26	chr15:83653400-83654000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr15:83653400-83654200	Enhancers	Pancreas	Pancrea
28	chr15:83653800-83654000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:83653800-83654000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:83653800-83654000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:83653800-83654000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr15:83653800-83654000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:83653800-83654000	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr15:83653800-83654000	Enhancers	Primary T cells from cord blood	blood
35	chr15:83653800-83654000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:83653800-83654000	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr15:83653800-83654000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr15:83653800-83654000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:83653800-83654000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr15:83653800-83654000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr15:83653800-83654000	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr15:83653800-83654000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:83653800-83654000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:83653800-83654000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:83653800-83654000	Enhancers	Muscle Satellite Cultured Cells	--
46	chr15:83653800-83654000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:83653800-83654000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:83653800-83654000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:83653800-83654000	Enhancers	Adipose Nuclei	Adipose
50	chr15:83653800-83654000	Enhancers	Liver	Liver

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