Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:78375346..78377789-chr15:78388044..78389607,2	MCF-7	breast:
2	chr15:78389206..78391508-chr15:78393451..78395983,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11072727	0.84[ASN][1000 genomes]
rs11072728	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs11072729	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs1542100	0.92[ASN][1000 genomes]
rs16969507	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16969508	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16969514	1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1971151	0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs2304827	0.95[ASN][1000 genomes]
rs2304828	0.96[ASN][1000 genomes]
rs2867922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3784328	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3784330	0.86[ASN][1000 genomes]
rs59999498	0.84[ASN][1000 genomes]
rs62009267	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62009270	0.81[ASN][1000 genomes]
rs62009271	0.84[ASN][1000 genomes]
rs7161765	0.87[ASN][1000 genomes]
rs7164338	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs72732564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359294	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs8032449	0.92[CHB][hapmap]
rs8036417	0.91[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs9806257	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11639461	CIB2	cis	Esophagus Mucosa	GTEx
rs11639461	RP11-114H24.2	cis	Nerve Tibial	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78385200-78400600	Weak transcription	Pancreas	Pancrea
2	chr15:78385600-78395400	Weak transcription	Spleen	Spleen
3	chr15:78386200-78396000	Weak transcription	Gastric	stomach
4	chr15:78386400-78390200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:78386400-78393400	Weak transcription	Fetal Thymus	thymus
6	chr15:78386600-78390000	Weak transcription	Placenta	Placenta
7	chr15:78386600-78396400	Weak transcription	Fetal Lung	lung
8	chr15:78386800-78396000	Weak transcription	Right Atrium	heart
9	chr15:78387000-78395400	Weak transcription	Fetal Stomach	stomach
10	chr15:78387200-78390000	Weak transcription	Fetal Intestine Small	intestine
11	chr15:78387200-78391000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:78387200-78395400	Weak transcription	Fetal Intestine Large	intestine
13	chr15:78388600-78390800	Weak transcription	Thymus	Thymus

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