Variant report

Variant	rs11639517
Chromosome Location	chr16:81912081-81912082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81639295..81641291-chr16:81909733..81912569,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11644436	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4627338	1.00[JPT][hapmap]
rs62047360	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1065088	chr16:81878481-81953248	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81876200-81918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:81894800-81912400	Weak transcription	Fetal Intestine Small	intestine
3	chr16:81898800-81912400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr16:81899000-81934600	Weak transcription	Right Atrium	heart
5	chr16:81900800-81925000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr16:81901000-81929200	Weak transcription	Brain Substantia Nigra	brain
7	chr16:81901200-81925000	Weak transcription	Adipose Nuclei	Adipose
8	chr16:81902800-81955600	Weak transcription	Fetal Kidney	kidney
9	chr16:81904400-81916800	Weak transcription	Fetal Intestine Large	intestine
10	chr16:81905800-81943000	Weak transcription	Small Intestine	intestine
11	chr16:81907800-81925000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr16:81908000-81912200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr16:81908000-81919400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr16:81908000-81924400	Weak transcription	Colon Smooth Muscle	Colon
15	chr16:81908200-81925000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr16:81908200-81936800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr16:81908400-81913000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr16:81908400-81919600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr16:81908400-81921200	Weak transcription	Liver	Liver
20	chr16:81908400-81923600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr16:81908400-81950000	Strong transcription	GM12878-XiMat	blood
22	chr16:81908400-81950200	Strong transcription	Primary B cells from peripheral blood	blood
23	chr16:81908800-81918200	Strong transcription	Primary B cells from cord blood	blood
24	chr16:81909000-81917600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr16:81909000-81918600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr16:81909400-81912400	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr16:81909400-81912400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr16:81909400-81912400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr16:81909400-81961800	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr16:81909600-81912200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr16:81909600-81912200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr16:81909600-81912400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr16:81909600-81912400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr16:81909600-81918200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr16:81909800-81912400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr16:81910000-81912400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr16:81910000-81912600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr16:81910000-81918800	Strong transcription	Spleen	Spleen
39	chr16:81910600-81922200	Weak transcription	Gastric	stomach
40	chr16:81910800-81912400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr16:81911400-81913800	Weak transcription	Placenta	Placenta
42	chr16:81911400-81916800	Weak transcription	Lung	lung
43	chr16:81911400-81936400	Weak transcription	Pancreas	Pancrea
44	chr16:81912000-81913000	Strong transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links