Variant report

Variant	rs116432795
Chromosome Location	chr3:155587915-155587916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:155587628-155588695	Hela-S3	cervix:	n/a	chr3:155588493-155588504
2	SMC3	chr3:155587823-155588668	Hela-S3	cervix:	n/a	chr3:155588197-155588207 chr3:155588424-155588434
3	HCFC1	chr3:155587045-155589834	Hela-S3	cervix:	n/a	n/a
4	MAX	chr3:155587780-155588283	SK-N-SH	brain:	n/a	n/a
5	IRF1	chr3:155587863-155588648	K562	blood:	n/a	chr3:155588426-155588440 chr3:155588201-155588215 chr3:155588124-155588144
6	CTCF	chr3:155587416-155589160	A549	lung:	n/a	chr3:155588393-155588411 chr3:155588395-155588408 chr3:155588028-155588037
7	POLR2A	chr3:155587743-155588971	H1-hESC	embryonic stem cell:	n/a	n/a
8	E2F4	chr3:155587665-155588635	MCF10A-Er-Src	breast:	n/a	chr3:155588338-155588345 chr3:155588431-155588441 chr3:155588342-155588352 chr3:155588427-155588436 chr3:155588602-155588614
9	ELF1	chr3:155587913-155588665	K562	blood:	n/a	chr3:155588535-155588544
10	POLR2A	chr3:155587750-155589947	SK-N-MC	brain:	n/a	n/a
11	POLR2A	chr3:155587812-155589870	PANC-1	pancreas:	n/a	n/a
12	POLR2A	chr3:155587873-155588237	HUVEC	blood vessel:	n/a	n/a
13	POLR2A	chr3:155587845-155589692	Gliobla	brain:	n/a	n/a
14	POLR2A	chr3:155587841-155589683	HepG2	liver:	n/a	n/a
15	RAD21	chr3:155587464-155588728	SK-N-SH	brain:	n/a	chr3:155588395-155588409
16	MAFK	chr3:155587835-155588547	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr3:155587817-155588720	U87	brain:	n/a	n/a
18	MYC	chr3:155587624-155589380	A549	lung:	n/a	chr3:155588950-155588960 chr3:155589002-155589012 chr3:155589086-155589096 chr3:155589231-155589241 chr3:155588428-155588438
19	MAZ	chr3:155587870-155589434	HepG2	liver:	n/a	chr3:155588950-155588960 chr3:155589002-155589012 chr3:155589086-155589096 chr3:155589231-155589241 chr3:155588428-155588438
20	SETDB1	chr3:155587852-155588187	U2OS	brain:	n/a	n/a
21	POLR2A	chr3:155587784-155589046	HepG2	liver:	n/a	n/a
22	POLR2A	chr3:155587839-155588757	HUVEC	blood vessel:	n/a	n/a
23	POLR2A	chr3:155587582-155590231	MCF10A-Er-Src	breast:	n/a	n/a
24	HEY1	chr3:155587825-155588713	HepG2	liver:	n/a	chr3:155588437-155588452 chr3:155588467-155588482 chr3:155588342-155588357
25	CEBPB	chr3:155587710-155587954	H1-hESC	embryonic stem cell:	n/a	n/a
26	HDAC2	chr3:155587872-155588567	HepG2	liver:	n/a	chr3:155587998-155588007
27	SIN3AK20	chr3:155587874-155588662	SK-N-SH	brain:	n/a	n/a
28	POLR2A	chr3:155587744-155589703	MCF-7	breast:	n/a	n/a
29	GATA2	chr3:155587761-155588458	SH-SY5Y	brain:	n/a	chr3:155587999-155588006 chr3:155587999-155588009
30	POLR2A	chr3:155587744-155589760	GM12892	blood:	n/a	n/a
31	YY1	chr3:155587891-155588146	GM12878	blood:	n/a	n/a
32	TBP	chr3:155587705-155588758	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr3:155587630-155590235	Hela-S3	cervix:	n/a	n/a
34	TAF1	chr3:155587849-155588756	MCF-7	breast:	n/a	n/a
35	RCOR1	chr3:155587485-155589644	K562	blood:	n/a	n/a
36	MAX	chr3:155587816-155589768	A549	lung:	n/a	chr3:155588950-155588960 chr3:155589002-155589012 chr3:155589086-155589096 chr3:155589231-155589241 chr3:155588428-155588438
37	POLR2A	chr3:155587828-155589780	K562	blood:	n/a	n/a
38	PBX3	chr3:155587832-155588640	A549	lung:	n/a	n/a
39	JUND	chr3:155587619-155589832	K562	blood:	n/a	chr3:155588953-155588962
40	SMARCB1	chr3:155587851-155589700	Hela-S3	cervix:	n/a	n/a
41	MAX	chr3:155587686-155589773	HepG2	liver:	n/a	chr3:155588950-155588960 chr3:155589002-155589012 chr3:155589086-155589096 chr3:155589231-155589241 chr3:155588428-155588438
42	POLR2A	chr3:155587560-155589776	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr3:155587865-155589678	K562	blood:	n/a	n/a
44	POLR2A	chr3:155587837-155588240	GM12878	blood:	n/a	n/a
45	TCF7L2	chr3:155587908-155589519	HCT-116	colon:	n/a	n/a
46	MAFK	chr3:155587670-155588485	K562	blood:	n/a	n/a
47	MXI1	chr3:155587397-155590422	SK-N-SH	brain:	n/a	n/a
48	POLR2A	chr3:155587885-155588785	HUVEC	blood vessel:	n/a	n/a
49	TAF1	chr3:155587891-155589514	K562	blood:	n/a	n/a
50	POLR2A	chr3:155587819-155589704	GM19193	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:155520264..155525290-chr3:155586627..155590296,8	K562	blood:
2	chr3:155461486..155465793-chr3:155586998..155592801,6	K562	blood:
3	chr3:155461523..155464397-chr3:155587900..155591398,5	MCF-7	breast:
4	chr3:155568718..155574348-chr3:155586235..155593210,15	K562	blood:
5	chr10:27530732..27532552-chr3:155587161..155588906,2	MCF-7	breast:
6	chr3:155520823..155524412-chr3:155585049..155590112,5	MCF-7	breast:
7	chr3:155522036..155526613-chr3:155586597..155592084,8	K562	blood:
8	chr3:155570444..155573449-chr3:155586982..155591161,10	MCF-7	breast:
9	chr3:155522507..155525053-chr3:155587874..155590161,2	MCF-7	breast:
10	chr3:155477418..155480054-chr3:155586699..155588871,2	MCF-7	breast:
11	chr3:155461486..155463918-chr3:155586998..155589713,4	K562	blood:
12	chr3:155586547..155588282-chr3:156889087..156891969,2	MCF-7	breast:
13	chr3:155569630..155574596-chr3:155585012..155589734,13	MCF-7	breast:

Variant related genes	Relation type
GMPS	TF binding region
ENSG00000241307	Chromatin interaction
ENSG00000214919	Chromatin interaction
ENSG00000262412	Chromatin interaction
ENSG00000107897	Chromatin interaction
ENSG00000169359	Chromatin interaction
ENSG00000114805	Chromatin interaction
ENSG00000174928	Chromatin interaction
ENSG00000222675	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv877681	chr3:155535670-155654017	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	esv3325134	chr3:155587683-155590231	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155587200-155588000	Flanking Active TSS	K562	blood
2	chr3:155587400-155588000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:155587400-155588000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:155587400-155588000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr3:155587400-155588000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr3:155587400-155588000	Flanking Active TSS	Brain Anterior Caudate	brain
7	chr3:155587400-155588000	Flanking Active TSS	Dnd41	blood
8	chr3:155587400-155588000	Flanking Active TSS	Hela-S3	cervix
9	chr3:155587400-155588200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:155587400-155590000	Active TSS	Aorta	Aorta
11	chr3:155587400-155590600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:155587400-155590600	Active TSS	HepG2	liver
13	chr3:155587400-155591000	Active TSS	H1 Cell Line	embryonic stem cell
14	chr3:155587600-155588000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:155587600-155588000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:155587600-155588000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:155587600-155588000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr3:155587600-155588000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
19	chr3:155587600-155588000	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr3:155587600-155588000	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr3:155587600-155588000	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr3:155587600-155588000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr3:155587600-155588000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr3:155587600-155588000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr3:155587600-155588000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr3:155587600-155588000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr3:155587600-155588000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr3:155587600-155588000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr3:155587600-155588000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr3:155587600-155588000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:155587600-155588000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr3:155587600-155588000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr3:155587600-155588000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:155587600-155588000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr3:155587600-155588000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:155587600-155588000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:155587600-155588000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr3:155587600-155588000	Flanking Active TSS	Adipose Nuclei	Adipose
39	chr3:155587600-155588000	Flanking Active TSS	Liver	Liver
40	chr3:155587600-155588000	Flanking Active TSS	Brain Angular Gyrus	brain
41	chr3:155587600-155588000	Flanking Active TSS	Brain Cingulate Gyrus	brain
42	chr3:155587600-155588000	Flanking Active TSS	Brain Germinal Matrix	brain
43	chr3:155587600-155588000	Flanking Active TSS	Brain Hippocampus Middle	brain
44	chr3:155587600-155588000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr3:155587600-155588000	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr3:155587600-155588000	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr3:155587600-155588000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr3:155587600-155588000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
49	chr3:155587600-155588000	Enhancers	Fetal Heart	heart
50	chr3:155587600-155588000	Flanking Active TSS	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links