Variant report

Variant	rs116433364
Chromosome Location	chr2:36688141-36688142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36685298..36687775-chr2:36688130..36689743,2	MCF-7	breast:
2	chr2:36582359..36584332-chr2:36684564..36688180,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv581468	chr2:36687111-36715689	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:36668800-36690200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:36669200-36688200	Weak transcription	Thymus	Thymus
4	chr2:36670000-36688200	Weak transcription	Primary T cells from cord blood	blood
5	chr2:36679200-36688400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:36679800-36704000	Weak transcription	Fetal Brain Female	brain
7	chr2:36680400-36695600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:36682400-36688800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:36683400-36688200	Weak transcription	Primary B cells from cord blood	blood
10	chr2:36683400-36691400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr2:36683800-36690800	Genic enhancers	Osteobl	bone
12	chr2:36683800-36704000	Weak transcription	Pancreas	Pancrea
13	chr2:36684000-36688200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:36684000-36695800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr2:36684200-36688400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr2:36684200-36695800	Weak transcription	Brain Substantia Nigra	brain
17	chr2:36684400-36691800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr2:36684800-36691800	Weak transcription	Fetal Muscle Leg	muscle
19	chr2:36684800-36694000	Weak transcription	Fetal Brain Male	brain
20	chr2:36684800-36695800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr2:36685000-36691600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:36685200-36689400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:36685600-36690400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:36685800-36689800	Genic enhancers	Hela-S3	cervix
25	chr2:36686000-36688200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr2:36686000-36689200	Genic enhancers	HepG2	liver
27	chr2:36686200-36689000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:36686400-36689200	Enhancers	Adipose Nuclei	Adipose
29	chr2:36686400-36689400	Enhancers	NHDF-Ad	bronchial
30	chr2:36686400-36689800	Genic enhancers	HSMM	muscle
31	chr2:36686600-36688200	Genic enhancers	Muscle Satellite Cultured Cells	--
32	chr2:36686600-36689400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:36686600-36689600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:36686600-36689600	Enhancers	HMEC	breast
35	chr2:36686600-36690200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:36686600-36690400	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr2:36686600-36691200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr2:36686600-36691400	Enhancers	H9 Cell Line	embryonic stem cell
39	chr2:36686800-36688400	Enhancers	Colonic Mucosa	Colon
40	chr2:36686800-36688600	Enhancers	Brain Anterior Caudate	brain
41	chr2:36686800-36688600	Enhancers	Ovary	ovary
42	chr2:36686800-36688800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr2:36686800-36689000	Enhancers	Rectal Smooth Muscle	rectum
44	chr2:36686800-36689000	Genic enhancers	HSMMtube	muscle
45	chr2:36686800-36689200	Enhancers	Stomach Smooth Muscle	stomach
46	chr2:36686800-36689200	Transcr. at gene 5' and 3'	A549	lung
47	chr2:36686800-36689800	Enhancers	Fetal Intestine Large	intestine
48	chr2:36687000-36688200	Weak transcription	Small Intestine	intestine
49	chr2:36687000-36688400	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr2:36687000-36689200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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