Variant report

Variant	rs116455351
Chromosome Location	chr6:109625017-109625018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:32)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:32 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:109624828-109626301	K562	blood:	n/a	n/a
2	SIN3AK20	chr6:109624913-109625817	MCF-7	breast:	n/a	n/a
3	EP300	chr6:109624869-109626613	K562	blood:	n/a	chr6:109624963-109624973
4	MYC	chr6:109624868-109626229	K562	blood:	n/a	n/a
5	JUND	chr6:109624960-109626258	K562	blood:	n/a	n/a
6	GATA3	chr6:109624872-109625799	MCF-7	breast:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
7	MYC	chr6:109624986-109626259	K562	blood:	n/a	n/a
8	TRIM28	chr6:109624749-109626180	K562	blood:	n/a	n/a
9	RCOR1	chr6:109624924-109626269	K562	blood:	n/a	n/a
10	TCF7L2	chr6:109624758-109625153	Hela-S3	cervix:	n/a	n/a
11	CCNT2	chr6:109624959-109626164	K562	blood:	n/a	n/a
12	HCFC1	chr6:109624970-109626203	K562	blood:	n/a	n/a
13	MAZ	chr6:109624869-109626317	K562	blood:	n/a	n/a
14	TEAD4	chr6:109624855-109626276	K562	blood:	n/a	n/a
15	TEAD4	chr6:109624744-109626315	K562	blood:	n/a	n/a
16	ZMIZ1	chr6:109624996-109626130	K562	blood:	n/a	n/a
17	CBX3	chr6:109624641-109626455	K562	blood:	n/a	n/a
18	TBL1XR1	chr6:109624960-109626155	K562	blood:	n/a	n/a
19	NR2F2	chr6:109624855-109626397	K562	blood:	n/a	n/a
20	MYC	chr6:109624972-109626186	K562	blood:	n/a	n/a
21	ATF1	chr6:109625016-109626254	K562	blood:	n/a	n/a
22	ARID3A	chr6:109625011-109626078	K562	blood:	n/a	n/a
23	MAX	chr6:109624918-109626176	K562	blood:	n/a	n/a
24	GATA1	chr6:109624821-109626516	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
25	TBL1XR1	chr6:109624864-109626236	K562	blood:	n/a	n/a
26	UBTF	chr6:109624933-109626221	K562	blood:	n/a	n/a
27	GATA1	chr6:109624987-109626322	PBDE	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
28	GTF2F1	chr6:109624964-109625110	K562	blood:	n/a	n/a
29	CEBPD	chr6:109625005-109626303	K562	blood:	n/a	n/a
30	ZNF143	chr6:109624903-109626117	K562	blood:	n/a	n/a
31	MAX	chr6:109624805-109626283	K562	blood:	n/a	n/a
32	RCOR1	chr6:109624810-109626312	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:
2	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
3	chr6:109623746..109625263-chr6:109628123..109630735,2	K562	blood:
4	chr6:109622184..109625668-chr6:109702158..109705094,3	MCF-7	breast:
5	chr6:109624816..109627658-chr6:109659263..109661556,2	K562	blood:
6	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201023	TF binding region
ENSG00000203799	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000243587	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619200-109625800	Weak transcription	Brain Angular Gyrus	brain
2	chr6:109619200-109626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:109619400-109629200	Weak transcription	Gastric	stomach
4	chr6:109619400-109638000	Weak transcription	HepG2	liver
5	chr6:109619600-109625200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:109619600-109625400	Enhancers	Stomach Smooth Muscle	stomach
7	chr6:109619600-109625600	Weak transcription	Lung	lung
8	chr6:109619600-109626000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
10	chr6:109621600-109625200	Weak transcription	Spleen	Spleen
11	chr6:109621600-109625600	Weak transcription	Right Atrium	heart
12	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:109621800-109625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:109622000-109625800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:109622400-109625200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:109622400-109626200	Enhancers	Placenta	Placenta
17	chr6:109623000-109625400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:109623000-109625600	Weak transcription	Adipose Nuclei	Adipose
19	chr6:109623200-109625400	Weak transcription	Brain Anterior Caudate	brain
20	chr6:109623200-109625800	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:109623400-109625200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:109623400-109625200	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:109623400-109625200	Weak transcription	Fetal Heart	heart
24	chr6:109623400-109625400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:109623600-109625200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:109623600-109625400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:109623600-109629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:109624000-109627000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:109624400-109626000	Enhancers	Hela-S3	cervix
30	chr6:109624400-109626400	Flanking Active TSS	K562	blood
31	chr6:109624400-109626600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr6:109624600-109625600	Enhancers	Aorta	Aorta
33	chr6:109624600-109626200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr6:109624600-109626400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:109624600-109626400	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr6:109624600-109626400	Enhancers	Pancreas	Pancrea
37	chr6:109624600-109626600	Enhancers	Fetal Intestine Large	intestine
38	chr6:109624600-109631000	Enhancers	Fetal Intestine Small	intestine
39	chr6:109624800-109625400	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr6:109624800-109625800	Enhancers	Fetal Muscle Leg	muscle
41	chr6:109624800-109626000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:109624800-109626200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:109624800-109626400	Enhancers	Stomach Mucosa	stomach
44	chr6:109624800-109627400	Enhancers	Primary B cells from peripheral blood	blood
45	chr6:109624800-109628200	Enhancers	Fetal Thymus	thymus
46	chr6:109624800-109629000	Enhancers	Duodenum Mucosa	Duodenum
47	chr6:109625000-109625200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:109625000-109625200	Enhancers	Psoas Muscle	Psoas
49	chr6:109625000-109625200	Enhancers	GM12878-XiMat	blood
50	chr6:109625000-109625400	Enhancers	Skeletal Muscle Male	skeletal muscle

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