Variant report

Variant	rs116456560
Chromosome Location	chr17:34028941-34028942
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34028855..34030467-chr17:34034063..34035967,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv908080	chr17:34027964-34054044	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3498046	chr17:34028839-34033037	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3498047	chr17:34028839-34033037	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33931000-34040200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:33968000-34055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:33999400-34043400	Weak transcription	Fetal Brain Male	brain
4	chr17:34002000-34032200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr17:34002000-34036800	Weak transcription	Colonic Mucosa	Colon
6	chr17:34006600-34032800	Weak transcription	Stomach Mucosa	stomach
7	chr17:34006600-34039800	Weak transcription	Small Intestine	intestine
8	chr17:34011800-34036200	Weak transcription	Hela-S3	cervix
9	chr17:34013600-34036000	Weak transcription	NHLF	lung
10	chr17:34016000-34036600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr17:34017200-34034600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr17:34017800-34040400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr17:34018800-34034600	Weak transcription	Pancreas	Pancrea
14	chr17:34018800-34036000	Weak transcription	Gastric	stomach
15	chr17:34018800-34050600	Weak transcription	Esophagus	oesophagus
16	chr17:34019000-34044000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr17:34021000-34036800	Weak transcription	NHEK	skin
18	chr17:34021200-34037000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr17:34022000-34036000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr17:34022000-34036200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr17:34022200-34036000	Weak transcription	Ovary	ovary
22	chr17:34022200-34042400	Weak transcription	Aorta	Aorta
23	chr17:34022400-34036000	Weak transcription	Left Ventricle	heart
24	chr17:34022600-34035400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr17:34022600-34036000	Weak transcription	Psoas Muscle	Psoas
26	chr17:34022800-34036000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr17:34022800-34036200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr17:34022800-34036400	Weak transcription	Colon Smooth Muscle	Colon
29	chr17:34023000-34034800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr17:34023000-34034800	Weak transcription	Brain Angular Gyrus	brain
31	chr17:34023000-34035200	Weak transcription	GM12878-XiMat	blood
32	chr17:34023000-34036800	Weak transcription	NHDF-Ad	bronchial
33	chr17:34023200-34031200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr17:34023200-34034600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr17:34023200-34034800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr17:34023200-34034800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr17:34023200-34035000	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr17:34023200-34035800	Weak transcription	Brain Anterior Caudate	brain
39	chr17:34023200-34036000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr17:34023200-34036000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr17:34023200-34036000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr17:34023200-34036800	Weak transcription	Rectal Smooth Muscle	rectum
43	chr17:34023200-34037000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr17:34023200-34037400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr17:34023200-34043800	Weak transcription	Spleen	Spleen
46	chr17:34023200-34044000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr17:34023200-34051600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr17:34023400-34034600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr17:34023400-34034800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr17:34023400-34036000	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links