Variant report

Variant	rs11648271
Chromosome Location	chr16:82640566-82640567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82640079..82642520-chr16:82646596..82648628,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10514547	1.00[ASN][1000 genomes]
rs13332623	1.00[ASN][1000 genomes]
rs16957567	1.00[JPT][hapmap]
rs16958621	1.00[CHB][hapmap]
rs17175173	1.00[ASN][1000 genomes]
rs17247500	1.00[ASN][1000 genomes]
rs25451	1.00[ASN][1000 genomes]
rs3865182	0.84[EUR][1000 genomes]
rs3886465	1.00[ASN][1000 genomes]
rs59317411	1.00[ASN][1000 genomes]
rs62038457	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62038459	1.00[ASN][1000 genomes]
rs62040560	1.00[ASN][1000 genomes]
rs62040561	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv833305	chr16:82563888-82722084	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059718	chr16:82564054-82810003	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1062787	chr16:82601618-82676019	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv542998	chr16:82601618-82676019	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82638000-82642600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr16:82638000-82642800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr16:82638000-82649400	Weak transcription	Hela-S3	cervix
4	chr16:82639000-82640800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr16:82639000-82640800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr16:82639200-82640800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr16:82639200-82640800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr16:82639200-82640800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr16:82639200-82640800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr16:82639200-82641000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr16:82639200-82641400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr16:82639400-82640800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:82639400-82640800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr16:82639400-82640800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:82639400-82640800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr16:82639400-82640800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr16:82639400-82640800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr16:82639400-82640800	Enhancers	Fetal Heart	heart
19	chr16:82639600-82640800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr16:82639600-82641000	Enhancers	H1 Cell Line	embryonic stem cell
21	chr16:82640200-82640600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr16:82640200-82640600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr16:82640200-82640600	Flanking Active TSS	HSMMtube	muscle
24	chr16:82640400-82640800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr16:82640400-82641800	Weak transcription	Fetal Muscle Leg	muscle
26	chr16:82640400-82642800	Weak transcription	Fetal Lung	lung

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