Variant report

Variant	rs116487700
Chromosome Location	chr3:105122287-105122288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv877304	chr3:105122214-105198374	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105113400-105122400	Weak transcription	Primary B cells from cord blood	blood
2	chr3:105114600-105123400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:105119000-105123000	Weak transcription	Liver	Liver
4	chr3:105119000-105133600	Weak transcription	Brain Angular Gyrus	brain
5	chr3:105119200-105123200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:105120000-105130000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:105120200-105122600	ZNF genes & repeats	GM12878-XiMat	blood
8	chr3:105120400-105129400	Weak transcription	Brain Anterior Caudate	brain
9	chr3:105120800-105122400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:105121000-105122600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:105121000-105134800	Weak transcription	NHLF	lung
12	chr3:105121200-105122400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:105121200-105122400	ZNF genes & repeats	Fetal Intestine Small	intestine
14	chr3:105121200-105122400	ZNF genes & repeats	Fetal Stomach	stomach
15	chr3:105121200-105122400	ZNF genes & repeats	Lung	lung
16	chr3:105121200-105122600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:105121200-105124000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:105121200-105128600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:105121200-105130200	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:105121400-105122600	Enhancers	HMEC	breast
21	chr3:105121400-105124600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:105121600-105122400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:105121600-105122400	Strong transcription	Osteobl	bone
24	chr3:105121600-105124000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:105121600-105136600	Weak transcription	HSMM	muscle
26	chr3:105121800-105122400	Enhancers	Hela-S3	cervix
27	chr3:105121800-105122800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:105121800-105133600	Weak transcription	NH-A	brain
29	chr3:105121800-105133800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr3:105122000-105122400	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr3:105122000-105122400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:105122000-105122400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
33	chr3:105122000-105122400	Strong transcription	Gastric	stomach
34	chr3:105122000-105122400	ZNF genes & repeats	Pancreas	Pancrea
35	chr3:105122000-105122400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
36	chr3:105122000-105122600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
37	chr3:105122000-105122600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr3:105122000-105122600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr3:105122000-105122600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
40	chr3:105122000-105122600	ZNF genes & repeats	NHEK	skin
41	chr3:105122000-105123000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:105122200-105122400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:105122200-105122400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr3:105122200-105122400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:105122200-105122400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:105122200-105122400	ZNF genes & repeats	Aorta	Aorta
47	chr3:105122200-105122400	ZNF genes & repeats	HSMMtube	muscle
48	chr3:105122200-105123000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:105122200-105123000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
50	chr3:105122200-105123200	ZNF genes & repeats	A549	lung

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