Variant report

Variant	rs11649160
Chromosome Location	chr16:81450009-81450010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11860316	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81447800-81451200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr16:81448000-81450200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:81448000-81450600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr16:81448400-81451000	Enhancers	A549	lung
5	chr16:81448600-81451000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:81448600-81453200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr16:81449200-81450600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr16:81449200-81451200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr16:81449400-81451000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr16:81449800-81450600	Enhancers	Fetal Brain Female	brain
11	chr16:81449800-81450800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr16:81449800-81450800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr16:81449800-81450800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr16:81449800-81451000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr16:81450000-81450600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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