Variant report

Variant	rs11649535
Chromosome Location	chr16:71591526-71591527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11645783	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11861513	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11865021	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2432522	0.83[ASN][1000 genomes]
rs60232159	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7190257	0.81[EUR][1000 genomes]
rs8051309	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8053677	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8056939	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71587000-71598000	Weak transcription	Brain Anterior Caudate	brain
2	chr16:71588400-71592200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:71589000-71594800	Enhancers	HepG2	liver
4	chr16:71589400-71591800	Weak transcription	Fetal Intestine Small	intestine
5	chr16:71589800-71591600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr16:71590400-71597600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr16:71591400-71593800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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