Variant report

Variant	rs11650990
Chromosome Location	chr17:15095227-15095228
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11655859	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12600338	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12604074	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs230918	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs230920	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs230921	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs230927	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs230989	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs230991	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs230993	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs230998	0.95[EUR][1000 genomes]
rs230999	0.95[EUR][1000 genomes]
rs231000	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs231006	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs231007	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs231008	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs231009	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs231010	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4356515	0.85[ASN][1000 genomes]
rs4791615	0.85[ASN][1000 genomes]
rs56174190	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56228123	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6502436	0.85[ASN][1000 genomes]
rs9916167	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15090200-15097800	Weak transcription	Psoas Muscle	Psoas
2	chr17:15095200-15095600	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links