Variant report

Variant	rs1165183
Chromosome Location	chr6:25836380-25836381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr6:25835786-25836712	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:25835717-25836604	HepG2	liver:	n/a	n/a
3	HDAC2	chr6:25836104-25836535	HepG2	liver:	n/a	n/a
4	NFIC	chr6:25835992-25836672	HepG2	liver:	n/a	n/a
5	ELF1	chr6:25836221-25836574	HepG2	liver:	n/a	n/a
6	POLR2A	chr6:25836077-25836491	HepG2	liver:	n/a	n/a
7	EP300	chr6:25836073-25836724	HepG2	liver:	n/a	n/a
8	FOXA2	chr6:25836189-25836530	HepG2	liver:	n/a	n/a
9	HNF4G	chr6:25836047-25836535	HepG2	liver:	n/a	n/a
10	SP1	chr6:25835968-25836620	HepG2	liver:	n/a	n/a
11	MAX	chr6:25835987-25836684	HepG2	liver:	n/a	n/a
12	HEY1	chr6:25835924-25836688	HepG2	liver:	n/a	n/a
13	MYBL2	chr6:25835857-25836708	HepG2	liver:	n/a	n/a
14	HEY1	chr6:25836065-25836522	HepG2	liver:	n/a	n/a
15	YY1	chr6:25836043-25836522	HepG2	liver:	n/a	n/a
16	POLR2A	chr6:25835972-25836639	HepG2	liver:	n/a	n/a
17	RXRA	chr6:25836045-25836555	HepG2	liver:	n/a	n/a
18	HNF4A	chr6:25836125-25836537	HepG2	liver:	n/a	chr6:25836362-25836377
19	TEAD4	chr6:25836016-25836769	HepG2	liver:	n/a	n/a
20	HNF4A	chr6:25836143-25836584	HepG2	liver:	n/a	chr6:25836362-25836377

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25831276..25833219-chr6:25835965..25837963,2	MCF-7	breast:

Variant related genes	Relation type
SLC17A1	TF binding region
ENSG00000124568	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1165150	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1165151	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1165153	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1165154	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1165160	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1165176	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1165177	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1165178	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1165179	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1165180	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1165182	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1165190	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1165192	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1165195	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1165196	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1165199	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1165205	0.91[EUR][1000 genomes]
rs1165207	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1165209	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1165213	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1165215	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1177442	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1183200	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1183201	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1183202	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1184803	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1184804	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1185153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1185567	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1185568	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1185569	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1185978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13197514	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13197601	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1359232	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1408273	0.94[EUR][1000 genomes]
rs1747522	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1747550	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2328895	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2762353	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2817188	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35720558	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3799352	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs566530	0.82[EUR][1000 genomes]
rs6905614	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs765285	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9393672	0.94[EUR][1000 genomes]
rs942379	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv427747	chr6:25641380-25908218	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25835200-25836600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:25835200-25837600	Enhancers	Fetal Intestine Small	intestine
3	chr6:25835400-25837200	Enhancers	Fetal Intestine Large	intestine
4	chr6:25835800-25837600	Flanking Active TSS	HepG2	liver
5	chr6:25836000-25836400	Enhancers	Aorta	Aorta
6	chr6:25836200-25836600	Enhancers	Liver	Liver

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