Variant report

Variant	rs11653919
Chromosome Location	chr17:46297538-46297539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46296978..46298715-chr17:46299496..46302023,2	K562	blood:
2	chr17:46297106..46299092-chr17:46317071..46320031,2	K562	blood:
3	chr17:46297134..46298953-chr17:46333479..46335931,2	K562	blood:
4	chr17:46288806..46291737-chr17:46295119..46298079,2	MCF-7	breast:
5	chr17:46296129..46298208-chr17:46360954..46363694,2	K562	blood:
6	chr17:46297106..46299092-chr17:46317071..46320404,3	K562	blood:
7	chr17:46297000..46299844-chr17:46338124..46340489,2	K562	blood:
8	chr17:46287226..46289688-chr17:46295233..46297657,2	K562	blood:
9	chr17:46297342..46300258-chr17:46302052..46303891,2	K562	blood:

No data

rs_ID	r²[population]
rs11653514	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11654116	0.87[AMR][1000 genomes]
rs11654627	1.00[CEU][hapmap]
rs17618349	1.00[CEU][hapmap]
rs17621806	0.82[EUR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
2	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:46288400-46307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr17:46292800-46298600	Strong transcription	Primary T cells from cord blood	blood
8	chr17:46293200-46297600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr17:46293800-46301000	Weak transcription	HUVEC	blood vessel
10	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr17:46295000-46301600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:46295000-46304400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:46295200-46303000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:46295400-46297600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr17:46295800-46303200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr17:46295800-46314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr17:46296000-46300600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr17:46296400-46297800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr17:46296600-46297600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr17:46296600-46297800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
21	chr17:46296800-46297600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr17:46296800-46297600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr17:46296800-46297600	Flanking Active TSS	K562	blood
24	chr17:46296800-46297800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr17:46297000-46297800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr17:46297200-46297600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr17:46297200-46297600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr17:46297400-46297800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr17:46297400-46300600	Weak transcription	A549	lung
30	chr17:46297400-46301600	Weak transcription	GM12878-XiMat	blood
31	chr17:46297400-46302000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr17:46297400-46302800	Weak transcription	Primary T cells fromperipheralblood	blood

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