Variant report

Variant	rs116546803
Chromosome Location	chr14:25100617-25100618
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901502	chr14:25074711-25101706	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1843155	chr14:25099980-25110067	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25099200-25100800	Enhancers	Esophagus	oesophagus
2	chr14:25099400-25101200	Enhancers	Gastric	stomach
3	chr14:25099400-25101400	Enhancers	Pancreas	Pancrea
4	chr14:25099400-25102200	Enhancers	Fetal Intestine Small	intestine
5	chr14:25099600-25100800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:25099600-25100800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:25099600-25100800	Enhancers	Fetal Muscle Trunk	muscle
8	chr14:25099800-25102000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:25100000-25100800	Enhancers	Fetal Muscle Leg	muscle
10	chr14:25100000-25101000	Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr14:25100200-25100800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:25100200-25102600	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:25100400-25100800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr14:25100400-25100800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr14:25100400-25101200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:25100600-25101600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr14:25100600-25101800	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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