Variant report

Variant	rs116550709
Chromosome Location	chr6:33400096-33400097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33263619..33269524-chr6:33392449..33400505,13	K562	blood:
2	chr6:33395899..33401993-chr6:33420102..33423796,11	MCF-7	breast:
3	chr6:33174005..33176257-chr6:33398590..33400783,2	MCF-7	breast:
4	chr6:33358270..33361160-chr6:33397889..33401606,4	K562	blood:
5	chr6:33398677..33403495-chr6:33419995..33423723,6	K562	blood:
6	chr6:33173944..33176266-chr6:33397713..33400457,2	K562	blood:
7	chr6:33392449..33400629-chr6:33419013..33424035,12	MCF-7	breast:
8	chr6:33399707..33401893-chr6:33408144..33410005,2	MCF-7	breast:
9	chr6:33237732..33247113-chr6:33390735..33401356,31	K562	blood:
10	chr6:33244147..33247113-chr6:33398461..33400467,3	K562	blood:
11	chr6:33357884..33361160-chr6:33397889..33401606,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000237441	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000235863	Chromatin interaction
ENSG00000213588	Chromatin interaction
ENSG00000199036	Chromatin interaction
ENSG00000223501	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
3	nsv885769	chr6:33377522-33412197	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	48 gene(s)	inside rSNPs	diseases
4	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv932196	chr6:33383131-33400706	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
6	nsv1019212	chr6:33398031-33413930	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33396000-33401400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:33396200-33400200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
3	chr6:33396200-33400200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr6:33396200-33400400	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr6:33396200-33400400	Flanking Active TSS	GM12878-XiMat	blood
6	chr6:33396400-33401200	Enhancers	Spleen	Spleen
7	chr6:33396400-33401600	Enhancers	Fetal Heart	heart
8	chr6:33396400-33403000	Weak transcription	Ovary	ovary
9	chr6:33396400-33405200	Weak transcription	Psoas Muscle	Psoas
10	chr6:33396600-33400600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:33396600-33400600	Enhancers	Fetal Muscle Leg	muscle
12	chr6:33396600-33400600	Enhancers	Lung	lung
13	chr6:33396600-33400800	Weak transcription	Right Atrium	heart
14	chr6:33396600-33401000	Weak transcription	HSMMtube	muscle
15	chr6:33396600-33416000	Weak transcription	Pancreas	Pancrea
16	chr6:33396800-33402000	Enhancers	Fetal Lung	lung
17	chr6:33396800-33403000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:33396800-33403000	Weak transcription	Aorta	Aorta
19	chr6:33397200-33400800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr6:33398000-33400200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr6:33398000-33401400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:33398200-33400200	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:33398200-33401400	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr6:33398200-33401400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:33398400-33400200	Enhancers	Placenta	Placenta
26	chr6:33398400-33401800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:33398400-33402000	Enhancers	Right Ventricle	heart
28	chr6:33398600-33400800	Flanking Active TSS	Fetal Thymus	thymus
29	chr6:33398600-33401200	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr6:33398600-33402200	Enhancers	Placenta Amnion	Placenta Amnion
31	chr6:33398600-33403000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:33398600-33403000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:33398800-33400200	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr6:33398800-33400200	Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr6:33398800-33400200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr6:33398800-33400400	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr6:33398800-33400400	Enhancers	Fetal Brain Male	brain
38	chr6:33398800-33400400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr6:33398800-33400600	Active TSS	H9 Cell Line	embryonic stem cell
40	chr6:33398800-33400600	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr6:33398800-33401400	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr6:33398800-33403000	Weak transcription	Osteobl	bone
43	chr6:33399000-33400200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:33399000-33400200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:33399200-33400200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:33399200-33400200	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
47	chr6:33399200-33400200	Weak transcription	Fetal Kidney	kidney
48	chr6:33399200-33400400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:33399200-33400400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:33399200-33400800	Weak transcription	Gastric	stomach

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