Variant report

Variant	rs1165512
Chromosome Location	chr1:56208264-56208265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1165493	0.82[YRI][hapmap]
rs12063640	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12098020	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3862238	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66911417	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv546304	chr1:56195659-56240015	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56206200-56208400	Enhancers	NHDF-Ad	bronchial
2	chr1:56206400-56208400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:56206600-56208400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56207800-56210800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:56208000-56208400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:56208200-56211200	Weak transcription	NHLF	lung
7	chr1:56208200-56211800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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