Variant report

Variant	rs11655900
Chromosome Location	chr17:33601552-33601553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11657540	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12325890	0.98[ASN][1000 genomes]
rs34647804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4795069	1.00[ASN][1000 genomes]
rs71366428	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7218825	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	esv2422399	chr17:33539240-33618601	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33598800-33603400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr17:33600200-33602600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:33600200-33602800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr17:33600600-33601600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr17:33600600-33602000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:33600600-33602000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr17:33600800-33602000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr17:33601000-33601600	Bivalent/Poised TSS	A549	lung
9	chr17:33601000-33602000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr17:33601000-33602000	Enhancers	Fetal Thymus	thymus
11	chr17:33601000-33602600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr17:33601200-33601600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr17:33601200-33601800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr17:33601200-33601800	Active TSS	Duodenum Mucosa	Duodenum
15	chr17:33601200-33602000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr17:33601200-33602200	Enhancers	Primary T cells from cord blood	blood
17	chr17:33601200-33602600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr17:33601400-33602000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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