Variant report

Variant	rs116568365
Chromosome Location	chr10:58298198-58298199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752691	chr10:57738694-58541894	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv467258	chr10:58175630-58340191	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv551061	chr10:58175630-58340191	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv825400	chr10:58271130-58342704	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1041942	chr10:58290439-58451787	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv540647	chr10:58290439-58451787	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv517747	chr10:58296224-58473735	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58297200-58298600	Enhancers	HMEC	breast
2	chr10:58297400-58298600	Enhancers	NHEK	skin
3	chr10:58297600-58298200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:58297600-58298200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr10:58297600-58298200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr10:58297600-58298200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr10:58297600-58298400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:58297600-58298400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:58297600-58298400	Enhancers	NH-A	brain
10	chr10:58297600-58298600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:58297600-58298600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr10:58297800-58298200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr10:58297800-58298200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr10:58297800-58298400	Enhancers	Hela-S3	cervix
15	chr10:58297800-58298600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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