Variant report

Variant	rs11659728
Chromosome Location	chr18:13287578-13287579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13265432..13267712-chr18:13286156..13288940,2	MCF-7	breast:
2	chr18:13283569..13285472-chr18:13287547..13289155,2	MCF-7	breast:
3	chr18:13286921..13290760-chr18:13293338..13296944,6	MCF-7	breast:
4	chr18:13286615..13289389-chr18:13302517..13304559,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62097325	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv2209	chr18:13276410-13316570	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13270000-13290000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr18:13270200-13288200	Weak transcription	Fetal Intestine Large	intestine
3	chr18:13270200-13290200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr18:13270200-13297600	Weak transcription	Colonic Mucosa	Colon
5	chr18:13272800-13289600	Weak transcription	Gastric	stomach
6	chr18:13274600-13301600	Weak transcription	Brain Substantia Nigra	brain
7	chr18:13274600-13302400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr18:13279600-13288600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr18:13280000-13289200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr18:13280600-13289000	Weak transcription	Brain Hippocampus Middle	brain
11	chr18:13280600-13291200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr18:13280800-13288400	Weak transcription	Primary T cells from cord blood	blood
13	chr18:13280800-13299800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr18:13281200-13291800	Weak transcription	Adipose Nuclei	Adipose
15	chr18:13282800-13288800	Weak transcription	Fetal Stomach	stomach
16	chr18:13282800-13295200	Weak transcription	Dnd41	blood
17	chr18:13282800-13301600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr18:13284800-13289600	Strong transcription	Thymus	Thymus
19	chr18:13285000-13289600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr18:13285000-13294200	Weak transcription	Psoas Muscle	Psoas
21	chr18:13285000-13316200	Weak transcription	Aorta	Aorta
22	chr18:13285400-13289800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr18:13285400-13289800	Weak transcription	Right Atrium	heart
24	chr18:13285400-13290200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr18:13285400-13292200	Weak transcription	Lung	lung
26	chr18:13285400-13296800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr18:13285400-13302600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr18:13285600-13288600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr18:13285600-13288600	Weak transcription	Fetal Muscle Leg	muscle
30	chr18:13285800-13288800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr18:13285800-13288800	Weak transcription	Colon Smooth Muscle	Colon
32	chr18:13286000-13292200	Weak transcription	Fetal Brain Female	brain
33	chr18:13286200-13288400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr18:13286200-13288800	Weak transcription	Fetal Heart	heart
35	chr18:13286200-13290200	Weak transcription	Liver	Liver
36	chr18:13286200-13291200	Weak transcription	Fetal Brain Male	brain
37	chr18:13286400-13287600	Enhancers	Left Ventricle	heart
38	chr18:13286400-13291600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr18:13286600-13288800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr18:13287000-13287800	Enhancers	Brain Anterior Caudate	brain
41	chr18:13287000-13289600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr18:13287000-13290000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr18:13287000-13291000	Weak transcription	Pancreas	Pancrea
44	chr18:13287200-13288600	Weak transcription	Fetal Thymus	thymus
45	chr18:13287200-13292000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr18:13287200-13298000	Weak transcription	Spleen	Spleen
47	chr18:13287400-13287600	Enhancers	Right Ventricle	heart

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