Variant report

Variant	rs11660158
Chromosome Location	chr18:8116625-8116626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11081360	0.92[ASN][1000 genomes]
rs11872382	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs16952967	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17398368	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17476745	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs526853	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs689319	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv458018	chr18:8110805-8645907	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv576426	chr18:8110805-8645907	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11660158	RALBP1	cis	parietal	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8068600-8124800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:8092800-8122200	Weak transcription	Thymus	Thymus
3	chr18:8096600-8125000	Weak transcription	Pancreas	Pancrea
4	chr18:8102800-8126600	Weak transcription	Psoas Muscle	Psoas
5	chr18:8103400-8123800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr18:8103600-8117800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr18:8103600-8122200	Weak transcription	Aorta	Aorta
8	chr18:8103600-8124800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:8103600-8136600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr18:8103600-8139200	Weak transcription	Brain Anterior Caudate	brain
11	chr18:8104200-8132600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:8110000-8123000	Weak transcription	Fetal Intestine Small	intestine
13	chr18:8110400-8116800	Weak transcription	Adipose Nuclei	Adipose
14	chr18:8110400-8138600	Weak transcription	Fetal Muscle Leg	muscle
15	chr18:8111200-8137200	Weak transcription	Left Ventricle	heart
16	chr18:8113600-8125000	Weak transcription	Gastric	stomach
17	chr18:8115200-8117200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr18:8115200-8117200	Enhancers	NHEK	skin
19	chr18:8115200-8117400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr18:8115200-8117800	Enhancers	HMEC	breast
21	chr18:8115400-8117800	Enhancers	Hela-S3	cervix
22	chr18:8116000-8117000	Enhancers	Muscle Satellite Cultured Cells	--
23	chr18:8116000-8117200	Enhancers	NH-A	brain
24	chr18:8116000-8117400	Enhancers	NHDF-Ad	bronchial
25	chr18:8116000-8117400	Enhancers	Osteobl	bone
26	chr18:8116000-8117800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr18:8116200-8117200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr18:8116200-8117400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr18:8116200-8117400	Enhancers	Liver	Liver
30	chr18:8116200-8117800	Enhancers	NHLF	lung
31	chr18:8116400-8116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr18:8116400-8117200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr18:8116400-8117200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr18:8116400-8117200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr18:8116400-8117200	Enhancers	HSMM	muscle
36	chr18:8116400-8117400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr18:8116600-8117000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr18:8116600-8117000	Active TSS	A549	lung
39	chr18:8116600-8117200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr18:8116600-8117200	Weak transcription	Placenta	Placenta
41	chr18:8116600-8117400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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