Variant report

Variant	rs11660634
Chromosome Location	chr18:13163125-13163126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11080628	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11659468	0.81[EUR][1000 genomes]
rs11661163	1.00[EUR][1000 genomes]
rs11663778	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3602	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs58322002	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58343237	0.88[EUR][1000 genomes]
rs58558999	0.81[AMR][1000 genomes]
rs59278606	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60444886	0.89[EUR][1000 genomes]
rs60710487	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60989271	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62095829	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs66466160	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66494849	0.83[AMR][1000 genomes]
rs6650616	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66929859	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67068160	0.81[EUR][1000 genomes]
rs67258461	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67415465	0.81[EUR][1000 genomes]
rs67538562	0.81[EUR][1000 genomes]
rs67565680	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67640584	0.81[EUR][1000 genomes]
rs67838921	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67996007	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68051414	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7233578	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72636759	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9952452	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062014	chr18:12687210-13183383	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv543655	chr18:12687210-13183383	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv1057083	chr18:12916779-13207538	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv576524	chr18:12918318-13183609	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1056593	chr18:12926314-13183383	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv1064364	chr18:12926314-13207686	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv833591	chr18:13093777-13253748	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv1803268	chr18:13143415-13175903	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv909409	chr18:13151544-13240284	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13158000-13165800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:13159600-13163400	Weak transcription	Osteobl	bone
3	chr18:13160600-13173400	Weak transcription	Thymus	Thymus
4	chr18:13161800-13163800	Enhancers	HepG2	liver
5	chr18:13162800-13163400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr18:13162800-13163600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr18:13163000-13164000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr18:13163000-13164200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr18:13163000-13164400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr18:13163000-13165600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links