Variant report

Variant	rs11660793
Chromosome Location	chr18:13610394-13610395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr18:13609977-13610428	GM12878	blood:	n/a	n/a
2	POLR2A	chr18:13610350-13617372	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
MIR4526	TF binding region
LDLRAD4	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8090616	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv868866	chr18:13604747-14089409	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv909412	chr18:13606184-13660590	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv458032	chr18:13606184-14150724	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv576529	chr18:13606184-14150724	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13598000-13614800	Weak transcription	Small Intestine	intestine
2	chr18:13599200-13610600	Weak transcription	Psoas Muscle	Psoas
3	chr18:13600600-13610400	Weak transcription	Right Ventricle	heart
4	chr18:13601200-13611800	Weak transcription	Liver	Liver
5	chr18:13604400-13610600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:13605000-13610600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr18:13605000-13610600	Weak transcription	Right Atrium	heart
8	chr18:13605600-13610600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr18:13605800-13610600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr18:13607200-13610400	Weak transcription	Brain Angular Gyrus	brain
11	chr18:13607400-13610400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr18:13607400-13610600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr18:13608200-13611000	Enhancers	Fetal Thymus	thymus
14	chr18:13608200-13611400	Enhancers	Primary B cells from peripheral blood	blood
15	chr18:13608200-13611800	Enhancers	Primary T cells fromperipheralblood	blood
16	chr18:13608400-13610600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr18:13608400-13611200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr18:13608400-13611800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr18:13608400-13612000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr18:13608600-13610800	Enhancers	Primary hematopoietic stem cells	blood
21	chr18:13608600-13611600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr18:13608800-13610600	Weak transcription	Gastric	stomach
23	chr18:13609000-13610600	Enhancers	Brain Hippocampus Middle	brain
24	chr18:13609000-13611200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr18:13609200-13610600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr18:13609200-13611600	Enhancers	Fetal Brain Male	brain
27	chr18:13609400-13610600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr18:13609400-13610600	Weak transcription	Placenta	Placenta
29	chr18:13609400-13610600	Weak transcription	Spleen	Spleen
30	chr18:13609400-13610600	Enhancers	GM12878-XiMat	blood
31	chr18:13609400-13611400	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr18:13609400-13611600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr18:13609600-13610600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr18:13609600-13610600	Enhancers	Dnd41	blood
35	chr18:13609600-13610800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr18:13609600-13611000	Weak transcription	Primary T cells from cord blood	blood
37	chr18:13609600-13611600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr18:13609600-13612600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr18:13609800-13610600	Enhancers	Adipose Nuclei	Adipose
40	chr18:13609800-13610600	Enhancers	Brain Substantia Nigra	brain
41	chr18:13609800-13610600	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr18:13609800-13610600	Weak transcription	Thymus	Thymus
43	chr18:13609800-13611200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr18:13610000-13610400	Weak transcription	Fetal Heart	heart
45	chr18:13610000-13610400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr18:13610000-13610600	Enhancers	Brain Anterior Caudate	brain
47	chr18:13610000-13610600	Enhancers	Stomach Smooth Muscle	stomach
48	chr18:13610000-13610800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr18:13610000-13611000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr18:13610000-13611200	Enhancers	Primary B cells from cord blood	blood

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