Variant report

Variant	rs11660959
Chromosome Location	chr18:13033470-13033471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:12988713..12992401-chr18:13031948..13034637,3	MCF-7	breast:
2	chr18:13032939..13034812-chr18:13035452..13038047,2	MCF-7	breast:
3	chr18:13026928..13029463-chr18:13032785..13034705,2	K562	blood:
4	chr18:13032734..13035826-chr18:13036723..13041080,5	K562	blood:
5	chr18:12988720..12991323-chr18:13032484..13035144,2	K562	blood:

Variant related genes	Relation type
ENSG00000101639	Chromatin interaction
ENSG00000266969	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11660010	1.00[AMR][1000 genomes]
rs11662567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11663762	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45536934	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062014	chr18:12687210-13183383	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv543655	chr18:12687210-13183383	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv1057083	chr18:12916779-13207538	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv576524	chr18:12918318-13183609	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1056593	chr18:12926314-13183383	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv1064364	chr18:12926314-13207686	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv1062413	chr18:12988947-13039941	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
8	nsv543657	chr18:12988947-13039941	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12995200-13042000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:12998400-13041600	Strong transcription	Dnd41	blood
3	chr18:12999200-13039000	Strong transcription	Fetal Thymus	thymus
4	chr18:13000400-13034000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:13005000-13039200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr18:13006400-13034400	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr18:13007200-13044000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr18:13008000-13046000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr18:13008400-13047200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr18:13011400-13034000	Strong transcription	Duodenum Smooth Muscle	Duodenum
11	chr18:13011400-13038800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr18:13011800-13033800	Strong transcription	Primary B cells from cord blood	blood
13	chr18:13013800-13052000	Weak transcription	Right Ventricle	heart
14	chr18:13013800-13053200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:13014200-13047200	Weak transcription	Psoas Muscle	Psoas
16	chr18:13015400-13036400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr18:13015600-13048800	Weak transcription	Small Intestine	intestine
18	chr18:13016400-13036200	Weak transcription	Gastric	stomach
19	chr18:13016800-13053200	Weak transcription	Esophagus	oesophagus
20	chr18:13017200-13056000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr18:13017600-13042200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr18:13018400-13038400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr18:13018600-13117400	Weak transcription	Stomach Mucosa	stomach
24	chr18:13020400-13033800	Strong transcription	GM12878-XiMat	blood
25	chr18:13020400-13034400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr18:13023200-13034400	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr18:13023800-13033800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr18:13023800-13037200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr18:13024000-13038600	Strong transcription	Fetal Intestine Large	intestine
30	chr18:13024000-13039400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr18:13024000-13042400	Weak transcription	Fetal Brain Female	brain
32	chr18:13024200-13041800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr18:13024200-13042200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr18:13024800-13039800	Strong transcription	Fetal Muscle Leg	muscle
35	chr18:13025000-13033600	Strong transcription	HepG2	liver
36	chr18:13025000-13034400	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr18:13025200-13033600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr18:13025200-13033600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr18:13025200-13033800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr18:13025200-13033800	Strong transcription	NHDF-Ad	bronchial
41	chr18:13025200-13034000	Strong transcription	Fetal Muscle Trunk	muscle
42	chr18:13025400-13033800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr18:13025400-13033800	Strong transcription	K562	blood
44	chr18:13025400-13034400	Strong transcription	Liver	Liver
45	chr18:13026200-13033600	Strong transcription	Hela-S3	cervix
46	chr18:13026200-13033800	Strong transcription	Adipose Nuclei	Adipose
47	chr18:13026200-13035600	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr18:13026200-13039200	Strong transcription	Primary T cells from cord blood	blood
49	chr18:13026400-13033600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr18:13026400-13033800	Strong transcription	Primary T helper cells PMA-I stimulated	--

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