Variant report

Variant	rs11661634
Chromosome Location	chr18:9755835-9755836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9723184..9725690-chr18:9755315..9757429,2	K562	blood:
2	chr18:9726328..9728477-chr18:9753850..9756440,2	K562	blood:
3	chr18:9754564..9758028-chr18:9758607..9762547,4	K562	blood:
4	chr18:9707138..9711181-chr18:9753549..9757373,4	MCF-7	breast:
5	chr18:9754934..9759602-chr18:9760680..9767118,9	K562	blood:

Variant related genes	Relation type
ENSG00000168461	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11663323	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28433665	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4798850	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8091300	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1064807	chr18:9695356-9770358	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv1821203	chr18:9747676-9757934	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv1796843	chr18:9749799-9757934	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1796789	chr18:9749957-9757734	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9743000-9756200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr18:9744000-9757600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:9744400-9757000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr18:9744400-9757000	Weak transcription	HSMMtube	muscle
5	chr18:9744400-9757200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr18:9748200-9759600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr18:9750200-9771400	Weak transcription	Brain Angular Gyrus	brain
8	chr18:9750400-9756800	Weak transcription	Brain Hippocampus Middle	brain
9	chr18:9750800-9758200	Weak transcription	NHLF	lung
10	chr18:9750800-9764000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr18:9751000-9757600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr18:9751000-9757800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr18:9751000-9760600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr18:9751000-9762200	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr18:9751400-9756400	Weak transcription	Primary B cells from cord blood	blood
16	chr18:9751600-9756600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr18:9751600-9757000	Weak transcription	Brain Substantia Nigra	brain
18	chr18:9751800-9758200	Weak transcription	Brain Anterior Caudate	brain
19	chr18:9752000-9757600	Weak transcription	Pancreas	Pancrea
20	chr18:9752200-9766000	Weak transcription	Ovary	ovary
21	chr18:9752600-9757000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr18:9753200-9756400	Enhancers	Osteobl	bone
23	chr18:9753400-9757600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr18:9754200-9757400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr18:9754200-9757800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr18:9754200-9758000	Weak transcription	HMEC	breast
27	chr18:9754200-9758200	Weak transcription	NHEK	skin
28	chr18:9754200-9761200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr18:9754200-9763800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr18:9754600-9758000	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr18:9754800-9756000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr18:9754800-9756200	Genic enhancers	Hela-S3	cervix
33	chr18:9754800-9759400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr18:9755000-9756400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr18:9755000-9758400	Weak transcription	Small Intestine	intestine
36	chr18:9755000-9758600	Weak transcription	A549	lung
37	chr18:9755200-9756200	Enhancers	K562	blood
38	chr18:9755200-9756400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr18:9755200-9756600	Enhancers	HUVEC	blood vessel
40	chr18:9755200-9757600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr18:9755200-9759000	Enhancers	NH-A	brain
42	chr18:9755200-9759400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr18:9755400-9756000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr18:9755400-9756000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr18:9755400-9756000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr18:9755400-9756000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr18:9755400-9756200	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr18:9755400-9756400	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr18:9755400-9756600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr18:9755400-9757800	Enhancers	Colon Smooth Muscle	Colon

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