Variant report

Variant	rs11661859
Chromosome Location	chr18:9098487-9098488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9092915..9099777-chr18:9099997..9106148,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178127	Chromatin interaction
ENSG00000265257	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12606569	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12964485	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12969399	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1056258	chr18:9094498-9181498	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9094600-9101400	Weak transcription	Placenta	Placenta
2	chr18:9095400-9100800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr18:9095400-9101600	Weak transcription	Fetal Lung	lung
4	chr18:9095600-9100600	Weak transcription	NHDF-Ad	bronchial
5	chr18:9095600-9101400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr18:9095600-9101400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr18:9095600-9101800	Weak transcription	Psoas Muscle	Psoas
8	chr18:9095800-9100800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr18:9095800-9101600	Weak transcription	Brain Hippocampus Middle	brain
10	chr18:9096000-9098600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr18:9096000-9100800	Weak transcription	NH-A	brain
12	chr18:9096000-9100800	Weak transcription	Osteobl	bone
13	chr18:9096000-9101000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr18:9096000-9101400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:9096000-9101400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr18:9096000-9101400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr18:9096000-9101400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr18:9096000-9101400	Weak transcription	Fetal Thymus	thymus
19	chr18:9096000-9101400	Weak transcription	HUVEC	blood vessel
20	chr18:9096000-9101600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr18:9096000-9101600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr18:9096000-9101600	Weak transcription	Small Intestine	intestine
23	chr18:9096000-9101600	Weak transcription	Stomach Mucosa	stomach
24	chr18:9096000-9101600	Weak transcription	Thymus	Thymus
25	chr18:9096000-9101600	Weak transcription	A549	lung
26	chr18:9096000-9101600	Weak transcription	NHLF	lung
27	chr18:9096000-9101800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr18:9096200-9099600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr18:9096200-9100200	Weak transcription	HepG2	liver
30	chr18:9096200-9101000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr18:9096200-9101200	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr18:9096200-9101400	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr18:9096200-9101400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr18:9096200-9101400	Weak transcription	Primary B cells from cord blood	blood
35	chr18:9096200-9101400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr18:9096200-9101400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr18:9096200-9101400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr18:9096200-9101400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr18:9096200-9101400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr18:9096200-9101400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr18:9096200-9101400	Weak transcription	Hela-S3	cervix
42	chr18:9096200-9101400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr18:9096200-9101600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr18:9096200-9101600	Weak transcription	Primary T cells from cord blood	blood
45	chr18:9096200-9101600	Weak transcription	Colon Smooth Muscle	Colon
46	chr18:9096400-9099400	Weak transcription	K562	blood
47	chr18:9096400-9100800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr18:9096400-9101400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr18:9096400-9101400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr18:9096400-9101400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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