Variant report

Variant	rs116625023
Chromosome Location	chr4:1241189-1241190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr4:1240908-1242172	HEK293-T-REx	kidney:	n/a	n/a
2	RUNX3	chr4:1240269-1241634	GM12878	blood:	n/a	chr4:1241327-1241342
3	POLR2A	chr4:1240218-1243708	MCF-7	breast:	n/a	n/a
4	TCF3	chr4:1240656-1241390	GM12878	blood:	n/a	chr4:1241128-1241143 chr4:1241131-1241140
5	POLR2A	chr4:1240933-1243481	ECC-1	luminal epithelium:	n/a	n/a
6	POLR2A	chr4:1240624-1244947	GM12878	blood:	n/a	n/a
7	POLR2A	chr4:1239447-1245326	K562	blood:	n/a	n/a
8	YY1	chr4:1240809-1241260	GM12878	blood:	n/a	chr4:1241032-1241042
9	POLR2A	chr4:1240894-1244220	HUVEC	blood vessel:	n/a	n/a
10	STAT5A	chr4:1240697-1241502	GM12878	blood:	n/a	n/a
11	MYC	chr4:1241092-1241562	K562	blood:	n/a	chr4:1241434-1241443 chr4:1241433-1241443
12	POU2F2	chr4:1240645-1241268	GM12878	blood:	n/a	n/a
13	MAX	chr4:1241112-1244105	A549	lung:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
14	MAX	chr4:1240344-1243648	NB4	blood:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
15	YY1	chr4:1240823-1241229	GM12892	blood:	n/a	chr4:1241032-1241042
16	POLR2A	chr4:1240777-1244120	GM19099	blood:	n/a	n/a
17	MAX	chr4:1241001-1244334	HCT-116	colon:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
18	MAFK	chr4:1241139-1241221	K562	blood:	n/a	n/a
19	YY1	chr4:1240728-1241412	GM12878	blood:	n/a	chr4:1241032-1241042
20	SMC3	chr4:1240867-1241459	GM12878	blood:	n/a	n/a
21	REST	chr4:1241114-1243788	H1-neurons	neurons:	n/a	chr4:1241467-1241480 chr4:1242386-1242399 chr4:1241266-1241276 chr4:1242363-1242376 chr4:1243612-1243632 chr4:1242093-1242103 chr4:1241445-1241458 chr4:1242360-1242373
22	MXI1	chr4:1240624-1244197	IMR90	lung:	n/a	chr4:1242014-1242023
23	PAX5	chr4:1241012-1241577	GM12892	blood:	n/a	n/a
24	ELF1	chr4:1240967-1241191	K562	blood:	n/a	n/a
25	POLR2A	chr4:1240276-1244249	GM18505	blood:	n/a	n/a
26	POLR2A	chr4:1240466-1244395	GM12892	blood:	n/a	n/a
27	UBTF	chr4:1241183-1242457	K562	blood:	n/a	n/a
28	POLR2A	chr4:1240710-1244234	K562	blood:	n/a	n/a
29	POLR2A	chr4:1240322-1244504	GM12891	blood:	n/a	n/a
30	HEY1	chr4:1240628-1241504	K562	blood:	n/a	n/a
31	MYC	chr4:1240563-1243638	NB4	blood:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
32	POLR2A	chr4:1241019-1244546	MCF-7	breast:	n/a	n/a
33	POLR2A	chr4:1240296-1244152	GM18951	blood:	n/a	n/a
34	POLR2A	chr4:1238918-1244163	GM12878	blood:	n/a	n/a
35	GTF2F1	chr4:1241170-1241205	K562	blood:	n/a	n/a
36	POLR2A	chr4:1239852-1245445	GM12892	blood:	n/a	n/a
37	MXI1	chr4:1240283-1244361	GM12878	blood:	n/a	chr4:1242014-1242023
38	MAZ	chr4:1240520-1241505	GM12878	blood:	n/a	chr4:1241434-1241443 chr4:1241433-1241443
39	MAX	chr4:1241105-1241664	H1-hESC	embryonic stem cell:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
40	POLR2A	chr4:1239738-1242639	GM12878	blood:	n/a	n/a
41	MAX	chr4:1240752-1242705	K562	blood:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
42	POLR2A	chr4:1240749-1241242	GM12891	blood:	n/a	n/a
43	POLR2A	chr4:1239867-1245313	HepG2	liver:	n/a	n/a
44	POLR2A	chr4:1241185-1243865	Hela-S3	cervix:	n/a	n/a
45	POLR2A	chr4:1238878-1245469	GM12878	blood:	n/a	n/a
46	CHD1	chr4:1240686-1241462	GM12878	blood:	n/a	n/a
47	POLR2A	chr4:1241150-1243552	A549	lung:	n/a	n/a
48	MAX	chr4:1241170-1241620	ECC-1	luminal epithelium:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
49	POLR2A	chr4:1240747-1245005	HepG2	liver:	n/a	n/a
50	SIN3A	chr4:1240987-1242522	H1-hESC	embryonic stem cell:	n/a	chr4:1242360-1242373 chr4:1241902-1241911 chr4:1241267-1241276 chr4:1241472-1241483

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:1241188-1241238	Caco-2	colon:	n/a
2	chr4:1241188-1241238	ECC-1	luminal epithelium:	n/a
3	chr4:1241188-1241238	RPTEC	kidney:	n/a
4	chr4:1241188-1241238	HEK293	kidney:	embryo
5	chr4:1241188-1241238	T-47D	breast:	n/a
6	chr4:1241188-1241238	ovcar-3	ovarian:	n/a
7	chr4:1241188-1241238	GM06990	blood:	n/a
8	chr4:1241188-1241238	HUVEC	blood vessel:	n/a
9	chr4:1241188-1241238	K562	blood:	n/a
10	chr4:1241188-1241238	HMEC	breast:	n/a
11	chr4:1241188-1241238	ProgFib	skin:	n/a
12	chr4:1241188-1241238	HEEpiC	esophagus:	n/a
13	chr4:1241188-1241238	SK-N-SH_RA	brain:	n/a
14	chr4:1241188-1241238	AG04450	lung:	fetal
15	chr4:1241188-1241238	IMR90	lung:	fetal
16	chr4:1241188-1241238	SK-N-SH	brain:	n/a
17	chr4:1241188-1241238	CMK	blood:	n/a
18	chr4:1241188-1241238	A549	lung:	n/a
19	chr4:1241188-1241238	HRPEpiC	eye:	n/a
20	chr4:1241188-1241238	HCM	heart:	n/a
21	chr4:1241188-1241238	U87	brain:	n/a
22	chr4:1241188-1241238	HL-60	blood:	n/a
23	chr4:1241188-1241238	Hepatocyte	liver:	n/a
24	chr4:1241188-1241238	AG04449	skin:	fetal
25	chr4:1241188-1241238	AG09309	skin:	n/a
26	chr4:1241188-1241238	AG10803	skin:	n/a
27	chr4:1241188-1241238	Hela-S3	cervix:	n/a
28	chr4:1241188-1241238	GM12878	blood:	n/a
29	chr4:1241188-1241238	HCF	heart:	n/a
30	chr4:1241188-1241238	GM19239	blood:	n/a
31	chr4:1241188-1241238	AG09319	gingival:	n/a
32	chr4:1241188-1241238	Jurkat	blood:	n/a
33	chr4:1241188-1241238	NB4	blood:	n/a
34	chr4:1241188-1241238	HRE	kidney:	n/a
35	chr4:1241188-1241238	MCF10A-Er-Src	breast:	n/a
36	chr4:1241188-1241238	HCPEpiC	choroid plexus:	n/a
37	chr4:1241188-1241238	NHBE	bronchial:	n/a
38	chr4:1241188-1241238	PrEC	prostate:	n/a
39	chr4:1241188-1241238	H1-hESC	embryonic stem cell:	embryo
40	chr4:1241188-1241238	MCF-7	breast:	n/a
41	chr4:1241188-1241238	GM12891	blood:	n/a
42	chr4:1241188-1241238	SAEC	small airway:	n/a
43	chr4:1241188-1241238	HCT-116	colon:	n/a
44	chr4:1241188-1241238	AoSMC	blood vessel:	n/a
45	chr4:1241188-1241238	LNCaP	prostate:	n/a
46	chr4:1241188-1241238	HRCEpiC	kidney:	n/a
47	chr4:1241188-1241238	BE2_C	brain:	n/a
48	chr4:1241188-1241238	NHDF-neo	bronchial:	n/a
49	chr4:1241188-1241238	NT2-D1	testis:	n/a
50	chr4:1241188-1241238	HIPEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:1128219..1129832-chr4:1239417..1241300,2	MCF-7	breast:
2	chr4:1215555..1220351-chr4:1239288..1242893,7	K562	blood:
3	chr12:6977980..6980393-chr4:1240474..1243068,2	MCF-7	breast:
4	chr17:57915852..57918679-chr4:1239651..1241849,2	MCF-7	breast:
5	chr4:1207031..1209938-chr4:1240960..1243998,4	K562	blood:
6	chr4:1066453..1068289-chr4:1240208..1241974,2	MCF-7	breast:
7	chr4:1159747..1163015-chr4:1240558..1244483,3	K562	blood:
8	chr4:925435..927433-chr4:1239888..1241441,2	MCF-7	breast:
9	chr4:1207048..1210414-chr4:1237792..1241348,3	K562	blood:
10	chr4:1201438..1204113-chr4:1239051..1243365,5	MCF-7	breast:
11	chr4:986510..988350-chr4:1240959..1243694,2	MCF-7	breast:
12	chr4:1145908..1147956-chr4:1241044..1242592,2	MCF-7	breast:
13	chr4:1158166..1163360-chr4:1238498..1245354,13	MCF-7	breast:
14	chr4:1005389..1008246-chr4:1241169..1243031,3	K562	blood:
15	chr20:58514614..58517164-chr4:1239495..1242214,2	MCF-7	breast:
16	chr4:1236833..1250005-chr4:1276188..1292579,54	MCF-7	breast:
17	chr4:1236808..1249320-chr4:1336333..1343819,66	MCF-7	breast:
18	chr4:1240883..1245378-chr4:1339091..1342291,13	K562	blood:
19	chr4:1238043..1241970-chr4:1281719..1285287,6	MCF-7	breast:
20	chr4:1051885..1054795-chr4:1239634..1242106,2	MCF-7	breast:
21	chr4:1240390..1245150-chr4:1578422..1582537,5	MCF-7	breast:
22	chr4:1235141..1249133-chr4:1336906..1347308,118	MCF-7	breast:
23	chr4:1003725..1006599-chr4:1238644..1243840,5	MCF-7	breast:
24	chr4:1239502..1245378-chr4:1336996..1344860,21	K562	blood:
25	chr4:1142514..1145503-chr4:1240960..1243114,2	K562	blood:
26	chr4:1239325..1241522-chr4:1343447..1345640,2	K562	blood:
27	chr4:990681..994690-chr4:1238010..1243594,6	MCF-7	breast:
28	chr4:1189059..1190794-chr4:1239654..1242349,2	K562	blood:
29	chr4:1002287..1006934-chr4:1240837..1243326,5	MCF-7	breast:
30	chr1:151817465..151820219-chr4:1240046..1241546,2	MCF-7	breast:
31	chr4:1020274..1022764-chr4:1238213..1242920,4	MCF-7	breast:
32	chr4:1204863..1206646-chr4:1239464..1241348,2	K562	blood:
33	chr4:1216435..1221821-chr4:1240439..1244617,5	MCF-7	breast:
34	chr4:1121885..1124644-chr4:1239644..1241550,2	MCF-7	breast:
35	chr4:1240362..1242023-chr4:1330911..1332884,2	MCF-7	breast:
36	chr4:1240615..1242380-chr4:1393657..1396651,2	MCF-7	breast:
37	chr4:1238004..1248980-chr4:1275065..1286840,30	K562	blood:
38	chr4:1238004..1246805-chr4:1279798..1288475,25	K562	blood:

Variant related genes	Relation type
CTBP1-AS2	TF binding region
CTBP1-AS2	CpG island
ENSG00000132825	Chromatin interaction
ENSG00000127415	Chromatin interaction
ENSG00000111669	Chromatin interaction
ENSG00000196227	Chromatin interaction
ENSG00000163945	Chromatin interaction
ENSG00000127419	Chromatin interaction
ENSG00000250259	Chromatin interaction
ENSG00000145217	Chromatin interaction
ENSG00000244459	Chromatin interaction
ENSG00000273179	Chromatin interaction
ENSG00000159692	Chromatin interaction
ENSG00000227189	Chromatin interaction
ENSG00000090316	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000159674	Chromatin interaction
ENSG00000178222	Chromatin interaction
ENSG00000178950	Chromatin interaction
ENSG00000215367	Chromatin interaction
ENSG00000127418	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv829835	chr4:1097586-1304239	Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv878328	chr4:1141573-1990425	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
6	nsv878329	chr4:1147407-1254930	Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv878330	chr4:1147407-1523930	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
8	nsv878331	chr4:1159680-1254930	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	nsv461152	chr4:1159680-1415698	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
10	nsv593278	chr4:1159680-1415698	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
11	nsv461153	chr4:1174861-1254930	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
12	nsv593279	chr4:1174861-1254930	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv461154	chr4:1179213-1254930	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
14	nsv593280	chr4:1179213-1254930	Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
15	nsv878332	chr4:1179213-1254930	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
16	nsv997971	chr4:1191256-1518521	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
17	nsv878333	chr4:1193832-1254930	Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	nsv461155	chr4:1203265-1352685	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv593281	chr4:1203265-1352685	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv1002097	chr4:1212573-1320086	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
21	nsv536986	chr4:1212573-1320086	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
22	esv1811773	chr4:1228251-1287474	ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
23	esv1800629	chr4:1228451-1287274	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
24	esv1812851	chr4:1228451-1287274	Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
25	esv1823612	chr4:1228451-1287274	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
26	esv1825633	chr4:1228451-1287274	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
27	esv1844406	chr4:1230397-1243775	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
28	esv1836927	chr4:1231363-1244037	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
29	esv1838677	chr4:1231540-1274734	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
30	nsv822433	chr4:1232688-1246206	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
31	nsv878334	chr4:1232910-1254930	Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
32	esv1839490	chr4:1237014-1254930	Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
33	nsv878335	chr4:1237014-1254930	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
34	nsv593282	chr4:1238363-1243573	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
35	nsv878336	chr4:1238859-1254930	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
36	nsv878337	chr4:1240091-1254930	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
37	esv3338577	chr4:1240652-1245250	Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
38	nsv593283	chr4:1240911-1243286	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
39	nsv593284	chr4:1240911-1243389	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
40	nsv593285	chr4:1240911-1243617	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
41	nsv593286	chr4:1240962-1243389	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
42	nsv593287	chr4:1240962-1245277	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1235000-1241200	Weak transcription	Aorta	Aorta
2	chr4:1237000-1241800	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr4:1238000-1241400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr4:1238400-1241400	Flanking Active TSS	Pancreas	Pancrea
5	chr4:1238800-1241200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:1239400-1241400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:1239400-1241600	Flanking Active TSS	Colonic Mucosa	Colon
8	chr4:1239600-1241400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:1239600-1241600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr4:1239800-1241200	Transcr. at gene 5' and 3'	NHEK	skin
11	chr4:1239800-1241400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:1239800-1241400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:1239800-1241400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:1239800-1241400	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr4:1239800-1241800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr4:1239800-1241800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:1239800-1242000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:1240000-1241200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:1240000-1241200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
20	chr4:1240000-1241400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr4:1240000-1241400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr4:1240000-1241400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr4:1240000-1241400	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr4:1240000-1241400	Flanking Active TSS	Fetal Brain Female	brain
25	chr4:1240000-1241400	Flanking Active TSS	Rectal Smooth Muscle	rectum
26	chr4:1240000-1241400	Flanking Active TSS	HMEC	breast
27	chr4:1240000-1241400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr4:1240000-1241600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr4:1240000-1241800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr4:1240000-1241800	Transcr. at gene 5' and 3'	Dnd41	blood
31	chr4:1240200-1241200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr4:1240200-1241200	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr4:1240200-1241200	Flanking Active TSS	Colon Smooth Muscle	Colon
34	chr4:1240200-1241200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr4:1240200-1241200	Flanking Active TSS	Hela-S3	cervix
36	chr4:1240200-1241200	Flanking Active TSS	HSMM	muscle
37	chr4:1240200-1241400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:1240200-1241400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr4:1240200-1241400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:1240200-1241400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr4:1240200-1241400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:1240200-1241400	Flanking Active TSS	Brain Germinal Matrix	brain
43	chr4:1240200-1241400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:1240200-1241400	Flanking Active TSS	Fetal Intestine Large	intestine
45	chr4:1240200-1241400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr4:1240200-1241400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
47	chr4:1240200-1241400	Flanking Active TSS	Right Ventricle	heart
48	chr4:1240200-1241400	Flanking Active TSS	Thymus	Thymus
49	chr4:1240200-1241400	Flanking Active TSS	Osteobl	bone
50	chr4:1240200-1241600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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