Variant report

Variant	rs11663785
Chromosome Location	chr18:13367216-13367217
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr18:13367065-13367216	HepG2	liver:	n/a	chr18:13367170-13367183 chr18:13367170-13367181 chr18:13367170-13367181

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13366355..13367895-chr18:13449002..13451702,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267393	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11659711	0.95[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11659822	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11659895	1.00[JPT][hapmap]
rs11661280	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11665476	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12456874	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12458323	1.00[JPT][hapmap]
rs12955917	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55882226	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9946524	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs9954816	0.86[EUR][1000 genomes]
rs9957334	0.85[EUR][1000 genomes]
rs9960998	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13351800-13374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr18:13354200-13371800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr18:13354200-13372000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr18:13354400-13371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr18:13355000-13374200	Weak transcription	Dnd41	blood
6	chr18:13356400-13379200	Weak transcription	Aorta	Aorta
7	chr18:13359400-13379400	Weak transcription	Psoas Muscle	Psoas
8	chr18:13361600-13369400	Weak transcription	Pancreas	Pancrea
9	chr18:13362000-13374600	Weak transcription	Fetal Muscle Leg	muscle
10	chr18:13363200-13369800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr18:13363600-13369200	Weak transcription	Fetal Heart	heart
12	chr18:13364200-13371400	Enhancers	Fetal Thymus	thymus
13	chr18:13365000-13369000	Weak transcription	HepG2	liver
14	chr18:13365200-13367400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr18:13365200-13367400	Weak transcription	Right Atrium	heart
16	chr18:13365200-13367600	Weak transcription	Spleen	Spleen
17	chr18:13365200-13368800	Enhancers	Brain Anterior Caudate	brain
18	chr18:13365200-13369400	Weak transcription	Primary T cells from cord blood	blood
19	chr18:13365200-13372200	Weak transcription	Brain Angular Gyrus	brain
20	chr18:13365400-13368800	Weak transcription	Right Ventricle	heart
21	chr18:13365600-13369200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr18:13365600-13369200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr18:13365600-13369600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr18:13365800-13369000	Weak transcription	Colon Smooth Muscle	Colon
25	chr18:13365800-13369000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr18:13365800-13370000	Weak transcription	Fetal Brain Male	brain
27	chr18:13365800-13371200	Weak transcription	Fetal Brain Female	brain
28	chr18:13365800-13376400	Weak transcription	Liver	Liver
29	chr18:13366200-13367400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr18:13366600-13367800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr18:13366800-13367800	Enhancers	Brain Germinal Matrix	brain
32	chr18:13366800-13368600	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr18:13366800-13369400	Weak transcription	Gastric	stomach
34	chr18:13366800-13374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr18:13367000-13367600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr18:13367000-13367800	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr18:13367000-13367800	Enhancers	Left Ventricle	heart
38	chr18:13367200-13367600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr18:13367200-13367600	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr18:13367200-13367600	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr18:13367200-13367600	Enhancers	Colonic Mucosa	Colon
42	chr18:13367200-13368200	Weak transcription	Thymus	Thymus
43	chr18:13367200-13372200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr18:13367200-13372200	Weak transcription	Brain Substantia Nigra	brain
45	chr18:13367200-13374600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links