Variant report

Variant	rs116649983
Chromosome Location	chr11:36649363-36649364
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv1850719	chr11:36616867-36657272	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv518415	chr11:36644076-36661723	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3459430	chr11:36647314-36654933	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv14043	chr11:36647350-36654814	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3459441	chr11:36647371-36654906	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3459452	chr11:36647377-36654904	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3459463	chr11:36647458-36654822	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv976512	chr11:36649363-36653482	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36616600-36657000	Weak transcription	Left Ventricle	heart
2	chr11:36630000-36678800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:36630600-36661000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:36630600-36682000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:36633600-36656000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:36640600-36649800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:36640800-36669400	Weak transcription	Aorta	Aorta
8	chr11:36641400-36650200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:36641400-36650600	Weak transcription	Right Ventricle	heart
10	chr11:36641400-36652600	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:36641400-36669400	Weak transcription	Adipose Nuclei	Adipose
12	chr11:36641400-36669600	Weak transcription	Ovary	ovary
13	chr11:36641400-36681000	Weak transcription	Primary T cells from cord blood	blood
14	chr11:36641600-36653000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:36641600-36660400	Weak transcription	Fetal Stomach	stomach
16	chr11:36642000-36650200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:36642000-36655000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:36642000-36655200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:36642000-36681000	Weak transcription	Fetal Kidney	kidney
20	chr11:36642200-36649600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:36642200-36650000	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:36642200-36669600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:36646000-36652600	Enhancers	Dnd41	blood
24	chr11:36646400-36677000	Weak transcription	Lung	lung
25	chr11:36647200-36650600	Enhancers	Thymus	Thymus
26	chr11:36647600-36661200	Weak transcription	Pancreas	Pancrea
27	chr11:36648000-36649400	Enhancers	HSMM	muscle
28	chr11:36648600-36653600	Enhancers	Fetal Thymus	thymus
29	chr11:36648600-36661000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:36648600-36681400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:36648800-36649400	Active TSS	Sigmoid Colon	Sigmoid Colon
32	chr11:36648800-36680600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:36649000-36649400	Enhancers	Fetal Muscle Leg	muscle
34	chr11:36649200-36650400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:36649200-36651000	Enhancers	HSMMtube	muscle
36	chr11:36649200-36656600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links