The 2.0 version of rSNPBase

Variant report

Variant rs116650258
Chromosome Location chr13:30880965-30880966
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:30879400-30881000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr13:30879600-30881000 Flanking Active TSS Adipose Nuclei Adipose
3 chr13:30879600-30881000 Flanking Active TSS HUVEC blood vessel
4 chr13:30879600-30881600 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
5 chr13:30879600-30882000 Active TSS A549 lung
6 chr13:30879800-30882000 Active TSS Fetal Thymus thymus
7 chr13:30879800-30882200 Active TSS HUES48 Cell Line embryonic stem cell
8 chr13:30879800-30882200 Active TSS HUES6 Cell Line embryonic stem cell
9 chr13:30879800-30882200 Active TSS Psoas Muscle Psoas
10 chr13:30879800-30882400 Active TSS ES-I3 Cell Line embryonic stem cell
11 chr13:30879800-30882400 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
12 chr13:30880000-30881000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr13:30880000-30881200 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr13:30880000-30881800 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
15 chr13:30880000-30881800 Active TSS HMEC breast
16 chr13:30880000-30882000 Active TSS Colon Smooth Muscle Colon
17 chr13:30880000-30882000 Active TSS Thymus Thymus
18 chr13:30880000-30882000 Active TSS NH-A brain
19 chr13:30880000-30882000 Active TSS NHLF lung
20 chr13:30880000-30882200 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr13:30880000-30882200 Active TSS Fetal Brain Female brain
22 chr13:30880000-30882400 Active TSS iPS-20b Cell Line embryonic stem cell
23 chr13:30880000-30882800 Active TSS Brain Inferior Temporal Lobe brain
24 chr13:30880200-30881800 Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
25 chr13:30880200-30881800 Active TSS GM12878-XiMat blood
26 chr13:30880200-30882000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr13:30880200-30882000 Active TSS Muscle Satellite Cultured Cells --
28 chr13:30880200-30882000 Active TSS Duodenum Smooth Muscle Duodenum
29 chr13:30880200-30882200 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr13:30880200-30882200 Active TSS Fetal Stomach stomach
31 chr13:30880200-30882200 Active TSS NHDF-Ad bronchial
32 chr13:30880200-30883000 Active TSS K562 blood
33 chr13:30880400-30881000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr13:30880400-30881000 Flanking Active TSS Brain Anterior Caudate brain
35 chr13:30880400-30881000 Flanking Active TSS Fetal Muscle Leg muscle
36 chr13:30880400-30881000 Flanking Active TSS Skeletal Muscle Male skeletal muscle
37 chr13:30880400-30881000 Flanking Active TSS Osteobl bone
38 chr13:30880400-30881200 Active TSS Right Atrium heart
39 chr13:30880400-30881400 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
40 chr13:30880400-30881800 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr13:30880400-30881800 Active TSS Fetal Intestine Small intestine
42 chr13:30880400-30881800 Active TSS Skeletal Muscle Female skeletal muscle
43 chr13:30880400-30881800 Active TSS Dnd41 blood
44 chr13:30880400-30882000 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
45 chr13:30880400-30882000 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr13:30880400-30882000 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
47 chr13:30880400-30882200 Active TSS iPS-15b Cell Line embryonic stem cell
48 chr13:30880400-30882400 Active TSS H1 Cell Line embryonic stem cell
49 chr13:30880400-30882400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr13:30880400-30882400 Active TSS ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015