Variant report

Variant	rs116659555
Chromosome Location	chr5:115724997-115724998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34146	chr5:115315944-115729919	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	esv2755349	chr5:115384101-115733101	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2763489	chr5:115693166-115733327	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv523400	chr5:115724366-115725791	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115697600-115748400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:115707600-115748400	Weak transcription	Fetal Intestine Large	intestine
3	chr5:115708600-115754000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:115711800-115730600	Weak transcription	Gastric	stomach
5	chr5:115714400-115730200	Weak transcription	Right Ventricle	heart
6	chr5:115718400-115737000	Weak transcription	Primary B cells from cord blood	blood
7	chr5:115718600-115748400	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr5:115718800-115731000	Weak transcription	Spleen	Spleen
9	chr5:115719400-115734800	Weak transcription	Primary T cells from cord blood	blood
10	chr5:115719600-115728000	Weak transcription	Fetal Intestine Small	intestine
11	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:115723400-115730200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:115724400-115725000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:115724400-115725000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:115724400-115725000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:115724400-115725200	Enhancers	Adipose Nuclei	Adipose
18	chr5:115724400-115725200	Enhancers	Fetal Kidney	kidney
19	chr5:115724600-115725200	Flanking Active TSS	HUVEC	blood vessel
20	chr5:115724600-115729400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:115724800-115725000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:115724800-115728000	Weak transcription	Psoas Muscle	Psoas
23	chr5:115724800-115729400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr5:115724800-115730200	Weak transcription	Esophagus	oesophagus
25	chr5:115724800-115730200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr5:115724800-115730200	Weak transcription	Left Ventricle	heart
27	chr5:115724800-115745600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr5:115724800-115749200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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