Variant report

Variant	rs1166720
Chromosome Location	chr15:40063186-40063187
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1027230	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1027231	1.00[AFR][1000 genomes]
rs1166719	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1166726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1688088	1.00[AFR][1000 genomes]
rs16969537	1.00[AMR][1000 genomes]
rs16969600	1.00[AMR][1000 genomes]
rs16969678	1.00[AMR][1000 genomes]
rs2631691	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2631716	1.00[AFR][1000 genomes]
rs2631719	1.00[AFR][1000 genomes]
rs2638008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2638011	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4322636	1.00[AMR][1000 genomes]
rs4641712	1.00[AMR][1000 genomes]
rs589137	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs596717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs603993	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs612775	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs621970	0.81[AFR][1000 genomes]
rs623984	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs628076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs639230	1.00[AMR][1000 genomes]
rs653964	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40040800-40063400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:40052200-40063600	Weak transcription	Brain Angular Gyrus	brain
3	chr15:40053400-40069400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:40054400-40069400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:40058200-40063200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:40059400-40074400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:40060400-40063400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:40062600-40063400	Enhancers	NHDF-Ad	bronchial
9	chr15:40062600-40063800	Enhancers	NHLF	lung
10	chr15:40062800-40063200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:40062800-40063400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:40062800-40063400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:40063000-40063400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:40063000-40063400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:40063000-40063400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:40063000-40063400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr15:40063000-40063400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:40063000-40063400	Enhancers	Brain Hippocampus Middle	brain
19	chr15:40063000-40063400	Enhancers	Stomach Smooth Muscle	stomach
20	chr15:40063000-40063400	Enhancers	HSMMtube	muscle
21	chr15:40063000-40063400	Enhancers	Osteobl	bone
22	chr15:40063000-40063600	Enhancers	Brain Substantia Nigra	brain
23	chr15:40063000-40063600	Enhancers	NH-A	brain
24	chr15:40063000-40063800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:40063000-40063800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:40063000-40063800	Enhancers	Brain Cingulate Gyrus	brain
27	chr15:40063000-40063800	Enhancers	Esophagus	oesophagus
28	chr15:40063000-40063800	Enhancers	Fetal Muscle Trunk	muscle
29	chr15:40063000-40063800	Enhancers	Ovary	ovary
30	chr15:40063000-40063800	Enhancers	Right Atrium	heart
31	chr15:40063000-40063800	Enhancers	HSMM	muscle
32	chr15:40063000-40064200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr15:40063000-40064200	Enhancers	Small Intestine	intestine
34	chr15:40063000-40064400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:40063000-40064400	Enhancers	Fetal Stomach	stomach
36	chr15:40063000-40064600	Enhancers	Fetal Muscle Leg	muscle

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