Variant report

Variant	rs11671112
Chromosome Location	chr19:37660286-37660287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1047333	0.87[EUR][1000 genomes]
rs11540540	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11668615	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11670374	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11673344	0.80[EUR][1000 genomes]
rs1234251	0.82[EUR][1000 genomes]
rs1533736	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17707446	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962889	0.81[EUR][1000 genomes]
rs45626541	0.82[EUR][1000 genomes]
rs55856280	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56080874	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56161518	0.89[ASN][1000 genomes]
rs56210764	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56248021	0.89[ASN][1000 genomes]
rs56330606	0.85[EUR][1000 genomes]
rs56343212	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7248693	1.00[ASN][1000 genomes]
rs7256746	0.81[EUR][1000 genomes]
rs7257135	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv2477	chr19:37617348-37662207	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
14	esv3433517	chr19:37643755-37675928	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs11671112	AC012309.5	cis	Artery Tibial	GTEx
rs11671112	ZNF585B	cis	Artery Tibial	GTEx
rs11671112	AC012309.5	cis	Esophagus Muscularis	GTEx
rs11671112	LINC00665	cis	Heart Left Ventricle	GTEx
rs11671112	AC012309.5	cis	Thyroid	GTEx
rs11671112	AC012309.5	cis	Heart Left Ventricle	GTEx
rs11671112	AC012309.5	cis	Esophagus Mucosa	GTEx
rs11671112	ZNF585B	cis	Esophagus Muscularis	GTEx
rs11671112	ZNF585A	Cis_1M	lymphoblastoid	RTeQTL
rs11671112	ZNF781	cis	Thyroid	GTEx

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37613800-37662200	ZNF genes & repeats	Liver	Liver
2	chr19:37635200-37661400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:37635200-37661600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:37639400-37663200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr19:37643000-37661400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:37643000-37662000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr19:37643200-37660800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr19:37643200-37661400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr19:37643200-37662400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:37643400-37660800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
11	chr19:37643400-37661400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr19:37643400-37661400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr19:37643800-37662000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr19:37645600-37661600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr19:37646400-37662000	ZNF genes & repeats	Fetal Lung	lung
16	chr19:37651200-37663000	Weak transcription	HSMMtube	muscle
17	chr19:37652200-37662800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr19:37652600-37661200	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr19:37652600-37663000	Weak transcription	NH-A	brain
20	chr19:37652800-37663200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr19:37653200-37660600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr19:37653200-37661200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
23	chr19:37653600-37661200	Strong transcription	Osteobl	bone
24	chr19:37653800-37661200	Strong transcription	Placenta	Placenta
25	chr19:37654200-37660800	Strong transcription	Brain Cingulate Gyrus	brain
26	chr19:37654600-37661200	ZNF genes & repeats	Fetal Intestine Large	intestine
27	chr19:37655000-37661200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr19:37655400-37661200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
29	chr19:37655600-37661200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr19:37655600-37661200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr19:37655600-37661400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr19:37655600-37661600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr19:37655600-37661800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
34	chr19:37655800-37660400	Weak transcription	NHLF	lung
35	chr19:37656000-37662800	Weak transcription	HMEC	breast
36	chr19:37656200-37660400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr19:37656200-37660600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr19:37656200-37661000	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr19:37656400-37663200	Weak transcription	Stomach Mucosa	stomach
40	chr19:37656800-37660800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr19:37656800-37661000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
42	chr19:37657000-37661200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
43	chr19:37657000-37661200	ZNF genes & repeats	A549	lung
44	chr19:37657000-37661400	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr19:37657200-37660400	Weak transcription	NHEK	skin
46	chr19:37657200-37660600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr19:37657200-37661000	Strong transcription	Brain Anterior Caudate	brain
48	chr19:37657200-37661400	ZNF genes & repeats	Fetal Brain Female	brain
49	chr19:37657400-37661000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr19:37657400-37661200	ZNF genes & repeats	Fetal Muscle Leg	muscle

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