Variant report

Variant	rs1167200
Chromosome Location	chr1:77755054-77755055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1167199	1.00[AMR][1000 genomes]
rs1167203	1.00[AFR][1000 genomes]
rs1167204	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1167206	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1167209	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1670605	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1670609	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs1670610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1670613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1670615	1.00[AMR][1000 genomes]
rs1721167	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1779175	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1936437	0.87[AFR][1000 genomes]
rs2799553	1.00[YRI][hapmap]
rs9439800	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77749000-77779200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:77749200-77778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:77749400-77755600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:77749400-77781600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:77749800-77768800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:77750000-77757400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:77750600-77772400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:77750800-77768200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr1:77751000-77757400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:77751000-77767600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:77751200-77757800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:77751400-77764600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr1:77752200-77756400	Weak transcription	Brain Hippocampus Middle	brain
14	chr1:77752600-77757200	Strong transcription	HSMM	muscle
15	chr1:77753400-77755200	Strong transcription	Primary T cells from cord blood	blood
16	chr1:77753400-77757600	Weak transcription	Brain Substantia Nigra	brain
17	chr1:77754000-77755600	Weak transcription	Stomach Mucosa	stomach
18	chr1:77754000-77757600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr1:77754400-77755200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:77754400-77759600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:77754400-77785800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:77754600-77755200	Strong transcription	NHLF	lung
23	chr1:77754600-77755200	Strong transcription	Osteobl	bone
24	chr1:77754600-77755400	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr1:77754800-77755800	Strong transcription	HSMMtube	muscle
26	chr1:77755000-77755400	Strong transcription	Brain Anterior Caudate	brain
27	chr1:77755000-77757000	Weak transcription	Brain Angular Gyrus	brain
28	chr1:77755000-77768800	Strong transcription	NHDF-Ad	bronchial

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