Variant report

Variant	rs11673323
Chromosome Location	chr19:39248186-39248187
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10407371	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10415219	0.92[CEU][hapmap]
rs10416718	0.93[EUR][1000 genomes]
rs10418728	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10421560	0.93[CEU][hapmap]
rs10424568	0.83[JPT][hapmap]
rs1060186	0.83[JPT][hapmap]
rs11083475	0.93[CEU][hapmap]
rs11665964	0.84[JPT][hapmap]
rs12460849	0.93[CEU][hapmap]
rs12462270	0.92[CEU][hapmap]
rs12462503	0.83[JPT][hapmap]
rs12984247	0.83[JPT][hapmap]
rs13344413	0.85[CEU][hapmap]
rs16972767	0.92[CEU][hapmap]
rs2112649	0.84[JPT][hapmap]
rs2279144	0.89[CEU][hapmap]
rs2303040	0.92[CEU][hapmap]
rs2368523	0.88[ASN][1000 genomes]
rs2887269	0.86[ASN][1000 genomes]
rs3745859	0.92[CEU][hapmap]
rs3786835	0.93[CEU][hapmap]
rs3786839	0.92[CEU][hapmap]
rs3786845	0.92[CEU][hapmap]
rs3786851	0.92[CEU][hapmap]
rs4802743	0.84[JPT][hapmap]
rs55923191	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56172450	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62120087	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6508813	0.83[JPT][hapmap]
rs7251903	0.93[CEU][hapmap]
rs7252630	0.84[JPT][hapmap]
rs7254100	0.92[CEU][hapmap]
rs749701	0.83[JPT][hapmap]
rs752067	0.83[JPT][hapmap]
rs8099948	0.83[JPT][hapmap]
rs8107416	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs8107877	0.84[JPT][hapmap]
rs883433	0.92[CEU][hapmap]
rs888997	0.83[JPT][hapmap]
rs9304576	0.83[JPT][hapmap]
rs9304578	0.92[EUR][1000 genomes]
rs936524	0.83[JPT][hapmap]
rs979971	0.92[CEU][hapmap]
rs979972	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833828	chr19:39084759-39257979	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv911668	chr19:39174669-39291771	Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv1826260	chr19:39178364-39248836	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	esv1837023	chr19:39190588-39425722	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39246400-39270800	Weak transcription	K562	blood
2	chr19:39246600-39249000	Weak transcription	HepG2	liver

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