Variant report

Variant	rs11673666
Chromosome Location	chr19:55968388-55968389
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:55968280-55968431	HepG2	liver:	n/a	n/a
2	POLR2A	chr19:55968005-55968407	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:55966841..55969896-chr19:55969994..55973204,5	MCF-7	breast:
2	chr19:55968375..55969938-chr19:55973350..55975214,2	MCF-7	breast:
3	chr19:55967736..55969359-chr19:55970949..55972859,2	MCF-7	breast:

Variant related genes	Relation type
ISOC2	TF binding region
ENSG00000063241	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4075908	0.89[YRI][hapmap]
rs57996888	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61555067	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912457	chr19:55725410-56019597	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	228 gene(s)	inside rSNPs	diseases
2	nsv432086	chr19:55807586-56050844	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	220 gene(s)	inside rSNPs	diseases
3	nsv912463	chr19:55845386-56004901	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
4	nsv912473	chr19:55874642-56145428	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
5	nsv912477	chr19:55936376-55972950	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv912478	chr19:55936376-56045522	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
7	nsv912479	chr19:55942456-55969746	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55963800-55971000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:55964000-55970400	Weak transcription	Fetal Lung	lung
3	chr19:55964000-55971200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr19:55964000-55971200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr19:55964000-55971200	Weak transcription	NHLF	lung
6	chr19:55964000-55971400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:55964000-55971800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr19:55964200-55968400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr19:55964200-55969200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:55964200-55971000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:55964200-55971000	Weak transcription	Colon Smooth Muscle	Colon
12	chr19:55964200-55971000	Weak transcription	Left Ventricle	heart
13	chr19:55964200-55971000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr19:55964200-55971200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr19:55964200-55971200	Weak transcription	Osteobl	bone
16	chr19:55964200-55971400	Weak transcription	HUVEC	blood vessel
17	chr19:55964200-55971600	Weak transcription	NHEK	skin
18	chr19:55964200-55972200	Weak transcription	Small Intestine	intestine
19	chr19:55964400-55971000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr19:55964400-55971000	Weak transcription	Stomach Mucosa	stomach
21	chr19:55964400-55971200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr19:55964400-55972000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr19:55964400-55972000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr19:55964600-55968400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr19:55964600-55971400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr19:55964600-55972200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr19:55964600-55972200	Weak transcription	Primary T cells from cord blood	blood
28	chr19:55964800-55968800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr19:55964800-55969400	Weak transcription	Brain Germinal Matrix	brain
30	chr19:55964800-55971000	Weak transcription	Fetal Brain Male	brain
31	chr19:55964800-55971000	Weak transcription	Fetal Brain Female	brain
32	chr19:55964800-55971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr19:55964800-55971600	Weak transcription	Right Atrium	heart
34	chr19:55964800-55972000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr19:55964800-55972200	Weak transcription	Primary B cells from cord blood	blood
36	chr19:55964800-55972200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr19:55965000-55971200	Weak transcription	A549	lung
38	chr19:55965000-55971600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr19:55965000-55972000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr19:55965200-55968600	Strong transcription	Spleen	Spleen
41	chr19:55965200-55969800	Strong transcription	Fetal Stomach	stomach
42	chr19:55965400-55969400	Weak transcription	K562	blood
43	chr19:55965400-55969800	Strong transcription	Fetal Intestine Small	intestine
44	chr19:55965400-55971000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr19:55965600-55968400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr19:55965600-55968600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr19:55965600-55971000	Weak transcription	Fetal Intestine Large	intestine
48	chr19:55965800-55969600	Weak transcription	Brain Anterior Caudate	brain
49	chr19:55966000-55968400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr19:55966000-55971200	Weak transcription	GM12878-XiMat	blood

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