Variant report

Variant	rs11674162
Chromosome Location	chr2:234748785-234748786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	2:234492023-234494396..2:234743181-234749667	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000228949	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11688461	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7565763	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv876020	chr2:234724225-234748814	Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv876021	chr2:234725819-234748814	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv876022	chr2:234726154-234748814	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv876023	chr2:234726154-234763137	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv1008316	chr2:234728911-234758539	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234736400-234762600	Weak transcription	Right Atrium	heart
2	chr2:234738200-234762000	Weak transcription	Esophagus	oesophagus
3	chr2:234739800-234752800	Weak transcription	Spleen	Spleen
4	chr2:234740000-234760000	Strong transcription	Thymus	Thymus
5	chr2:234740200-234761000	Weak transcription	Primary B cells from cord blood	blood
6	chr2:234740400-234762200	Weak transcription	Primary T cells from cord blood	blood
7	chr2:234741200-234759800	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr2:234741800-234750400	Weak transcription	Fetal Kidney	kidney
9	chr2:234741800-234762000	Weak transcription	Gastric	stomach
10	chr2:234742000-234759600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr2:234742200-234749200	Weak transcription	Placenta	Placenta
12	chr2:234742200-234750000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:234742200-234759400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:234742200-234760400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:234742200-234762200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:234742600-234759600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:234742600-234759800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr2:234742600-234760400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:234742600-234760600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr2:234742600-234760600	Strong transcription	NHEK	skin
21	chr2:234742600-234760800	Strong transcription	H9 Cell Line	embryonic stem cell
22	chr2:234742800-234759800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:234742800-234760400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr2:234742800-234760600	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:234742800-234760600	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:234742800-234760800	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr2:234743000-234758600	Strong transcription	Fetal Intestine Large	intestine
28	chr2:234743000-234759400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr2:234743000-234760000	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr2:234743000-234760000	Strong transcription	HMEC	breast
31	chr2:234743000-234760800	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr2:234743000-234760800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr2:234743000-234761200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr2:234743200-234749000	Weak transcription	Fetal Brain Female	brain
35	chr2:234743200-234760200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr2:234743200-234760600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr2:234743200-234760600	Strong transcription	Fetal Muscle Leg	muscle
38	chr2:234743400-234751000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr2:234743400-234759400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:234743600-234754000	Strong transcription	Fetal Intestine Small	intestine
41	chr2:234743800-234759800	Strong transcription	Osteobl	bone
42	chr2:234744000-234753800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:234744000-234760400	Strong transcription	K562	blood
44	chr2:234744000-234762400	Weak transcription	Small Intestine	intestine
45	chr2:234744200-234755400	Weak transcription	Fetal Brain Male	brain
46	chr2:234744600-234748800	Strong transcription	Fetal Lung	lung
47	chr2:234744600-234753600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
48	chr2:234744600-234762000	Weak transcription	Colonic Mucosa	Colon
49	chr2:234745600-234748800	Weak transcription	HSMM	muscle
50	chr2:234745600-234749600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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