Variant report

Variant	rs11675607
Chromosome Location	chr2:50365727-50365728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10167892	0.86[EUR][1000 genomes]
rs10169521	1.00[CEU][hapmap]
rs10187296	1.00[CEU][hapmap];0.88[TSI][hapmap];0.82[YRI][hapmap]
rs10199314	0.81[AMR][1000 genomes]
rs10207450	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs10210059	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10490232	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs11681755	1.00[CEU][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs11681846	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11681950	1.00[CEU][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs11686497	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs11886553	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11887362	0.86[EUR][1000 genomes]
rs11889906	0.86[EUR][1000 genomes]
rs11895273	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11897898	1.00[CEU][hapmap]
rs11898208	0.85[EUR][1000 genomes]
rs11900179	1.00[CEU][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs11903624	0.86[EUR][1000 genomes]
rs13385402	1.00[CEU][hapmap]
rs13410042	0.94[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs13415902	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs13427317	0.81[AMR][1000 genomes]
rs1520528	1.00[CEU][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs17508170	1.00[CEU][hapmap]
rs17509125	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1915218	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28463997	0.85[EUR][1000 genomes]
rs28582966	0.87[EUR][1000 genomes]
rs60062665	0.87[EUR][1000 genomes]
rs62132539	0.93[ASN][1000 genomes]
rs62133116	0.85[EUR][1000 genomes]
rs6545156	0.88[EUR][1000 genomes]
rs6545157	0.86[JPT][hapmap]
rs6734277	1.00[YRI][hapmap]
rs6738135	0.92[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7560135	1.00[CEU][hapmap]
rs7576851	1.00[CEU][hapmap]
rs7578644	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv932915	chr2:50306630-50628415	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2756107	chr2:50307245-50440043	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948833	chr2:50307245-50459077	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2756536	chr2:50313811-50375695	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1002344	chr2:50326207-50518933	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv535692	chr2:50326207-50518933	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11675607	CHAC2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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