Variant report

Variant	rs116756804
Chromosome Location	chr4:165899348-165899349
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr4:165898234-165899396	GM12878	blood:	n/a	n/a
2	MTA3	chr4:165898227-165899447	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
TRIM61	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019150	chr4:165505585-165907924	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv880382	chr4:165793001-165964290	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	esv2757965	chr4:165801816-165976350	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	esv2759299	chr4:165801816-165976350	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv528686	chr4:165814359-165930168	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1015970	chr4:165852926-165973078	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv830140	chr4:165855999-165956612	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
14	nsv967698	chr4:165898469-165911460	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165897600-165899400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:165897600-165899400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:165897800-165899400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:165897800-165899400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:165897800-165899400	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr4:165897800-165899400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:165897800-165899400	Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr4:165897800-165899400	Active TSS	Fetal Stomach	stomach
9	chr4:165897800-165899400	Active TSS	Right Atrium	heart
10	chr4:165897800-165899600	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr4:165898000-165899400	Active TSS	Primary B cells from cord blood	blood
12	chr4:165898000-165899400	Active TSS	Brain Anterior Caudate	brain
13	chr4:165898000-165899400	Active TSS	Brain Hippocampus Middle	brain
14	chr4:165898000-165899400	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr4:165898000-165899400	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr4:165898000-165899400	Active TSS	Rectal Smooth Muscle	rectum
17	chr4:165898200-165899400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:165898200-165899400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr4:165898200-165899400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr4:165898200-165899400	Bivalent/Poised TSS	Liver	Liver
21	chr4:165898200-165899400	Active TSS	Brain Cingulate Gyrus	brain
22	chr4:165898200-165899400	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr4:165898400-165899400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr4:165898400-165899400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:165898400-165899400	Active TSS	Osteobl	bone
26	chr4:165898600-165899400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:165898800-165899400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:165898800-165899400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:165898800-165899400	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr4:165898800-165899400	Flanking Active TSS	Fetal Muscle Trunk	muscle
31	chr4:165898800-165899400	Enhancers	Small Intestine	intestine
32	chr4:165899000-165899400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:165899000-165899400	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:165899000-165899400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:165899000-165899400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr4:165899000-165899400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:165899000-165899400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr4:165899000-165899400	Active TSS	Fetal Brain Male	brain
39	chr4:165899000-165899400	Flanking Active TSS	Fetal Intestine Small	intestine
40	chr4:165899000-165899400	Flanking Active TSS	Fetal Muscle Leg	muscle
41	chr4:165899000-165899400	Flanking Active TSS	GM12878-XiMat	blood
42	chr4:165899200-165899400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr4:165899200-165899400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr4:165899200-165899400	Enhancers	H9 Cell Line	embryonic stem cell
45	chr4:165899200-165899400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr4:165899200-165899400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr4:165899200-165899400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr4:165899200-165899400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr4:165899200-165899400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
50	chr4:165899200-165899400	Enhancers	Primary monocytes fromperipheralblood	blood

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