Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11674685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11681525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11687464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11689322	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs11689575	0.84[CEU][hapmap];0.97[EUR][1000 genomes]
rs11691685	0.88[EUR][1000 genomes]
rs1346344	1.00[YRI][hapmap]
rs16823886	1.00[YRI][hapmap]
rs4384720	0.84[CEU][hapmap]
rs67365209	1.00[EUR][1000 genomes]
rs6752912	0.84[EUR][1000 genomes]
rs6756405	0.84[EUR][1000 genomes]
rs67963154	0.81[EUR][1000 genomes]
rs72852150	0.84[EUR][1000 genomes]
rs72852164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72852199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72853207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72853210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72853221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72853226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72853247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72853253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72853263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7595770	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002563	chr2:145182201-145863253	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv535957	chr2:145182201-145863253	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834397	chr2:145439528-145608628	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145506600-145516400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:145513000-145514200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr2:145513400-145513800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr2:145513400-145513800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr2:145513400-145513800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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