Variant report

Variant	rs1167635
Chromosome Location	chr12:26077540-26077541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1167632	0.87[EUR][1000 genomes]
rs12311746	0.87[EUR][1000 genomes]
rs1691898	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1691903	0.87[EUR][1000 genomes]
rs1797971	0.84[AFR][1000 genomes]
rs73073025	0.82[EUR][1000 genomes]
rs864916	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26073600-26079600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:26076000-26079600	Weak transcription	NHDF-Ad	bronchial
3	chr12:26076800-26077800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:26076800-26078400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:26076800-26078400	Enhancers	HMEC	breast
6	chr12:26076800-26080000	Enhancers	HUVEC	blood vessel
7	chr12:26077400-26077800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:26077400-26077800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr12:26077400-26077800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:26077400-26077800	Flanking Active TSS	Hela-S3	cervix
11	chr12:26077400-26077800	Flanking Active TSS	NHEK	skin
12	chr12:26077400-26078000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr12:26077400-26078000	Enhancers	Lung	lung
14	chr12:26077400-26078400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:26077400-26078400	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links