Variant report

Variant	rs11676456
Chromosome Location	chr2:32331511-32331512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11695080	0.81[ASN][1000 genomes]
rs13006880	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13013695	0.82[EUR][1000 genomes]
rs13017027	0.85[EUR][1000 genomes]
rs212702	0.82[EUR][1000 genomes]
rs34835885	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7569264	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv833670	chr2:32295778-32481857	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv873778	chr2:32297984-32409007	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv873779	chr2:32330885-32372245	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32290400-32353400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:32291000-32332600	Weak transcription	A549	lung
3	chr2:32291600-32332200	Weak transcription	HUVEC	blood vessel
4	chr2:32292000-32343200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:32292600-32353800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:32295800-32353800	Weak transcription	Fetal Brain Male	brain
7	chr2:32296400-32362600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:32297600-32360600	Weak transcription	Osteobl	bone
9	chr2:32298800-32341400	Weak transcription	Small Intestine	intestine
10	chr2:32300000-32339600	Weak transcription	HepG2	liver
11	chr2:32309800-32381200	Weak transcription	NHDF-Ad	bronchial
12	chr2:32313200-32360600	Weak transcription	NH-A	brain
13	chr2:32316000-32353600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr2:32316200-32343200	Weak transcription	HSMM	muscle
15	chr2:32322200-32353400	Weak transcription	K562	blood
16	chr2:32325400-32353800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:32326000-32352200	Weak transcription	HSMMtube	muscle
18	chr2:32329600-32333000	Strong transcription	Primary T cells from cord blood	blood
19	chr2:32330200-32331600	ZNF genes & repeats	Ovary	ovary
20	chr2:32330200-32332000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:32330200-32332200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
22	chr2:32330200-32332400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr2:32330200-32332600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr2:32330200-32333000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr2:32330200-32333000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:32330200-32333000	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr2:32330200-32333200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
28	chr2:32330200-32333200	Strong transcription	Liver	Liver
29	chr2:32330200-32333400	Strong transcription	Stomach Smooth Muscle	stomach
30	chr2:32330200-32333600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:32330200-32333600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:32330200-32334000	Strong transcription	Fetal Thymus	thymus
33	chr2:32330400-32331600	Strong transcription	Brain Anterior Caudate	brain
34	chr2:32330400-32332200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr2:32330400-32332200	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr2:32330400-32332400	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr2:32330400-32332400	Strong transcription	Left Ventricle	heart
38	chr2:32330400-32332600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr2:32330400-32332800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr2:32330400-32333000	Strong transcription	Adipose Nuclei	Adipose
41	chr2:32330400-32333200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:32330400-32333400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
43	chr2:32330400-32333600	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr2:32330400-32333600	Strong transcription	Primary B cells from cord blood	blood
45	chr2:32330400-32333800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr2:32330400-32334000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr2:32330600-32331600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr2:32330600-32331800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr2:32330600-32331800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
50	chr2:32330600-32333000	Strong transcription	Rectal Mucosa Donor 29	rectum

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