Variant report

Variant	rs1167727
Chromosome Location	chr12:120965508-120965509
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:120728049..120731590-chr12:120965249..120968541,5	K562	blood:
2	chr12:120637319..120639058-chr12:120965439..120967173,2	K562	blood:
3	chr12:120728453..120733011-chr12:120965347..120973411,16	MCF-7	breast:
4	chr12:120964646..120969249-chr12:120969286..120973951,11	MCF-7	breast:
5	chr12:120965360..120967085-chr12:121018477..121020344,2	MCF-7	breast:
6	chr12:120932523..120935512-chr12:120965345..120968367,3	MCF-7	breast:
7	chr12:120956274..120958280-chr12:120963223..120965844,2	MCF-7	breast:
8	chr12:120637319..120640372-chr12:120965439..120969225,4	K562	blood:
9	chr12:120965472..120968197-chr12:121646463..121648820,2	K562	blood:
10	chr12:120729237..120731146-chr12:120965181..120968217,3	MCF-7	breast:
11	chr12:120905660..120907924-chr12:120965439..120968401,2	MCF-7	breast:
12	chr12:120957931..120961422-chr12:120962483..120967009,5	K562	blood:
13	chr12:120907343..120910344-chr12:120965426..120968868,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000088986	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000248008	Chromatin interaction
ENSG00000255857	Chromatin interaction
ENSG00000167272	Chromatin interaction
ENSG00000111786	Chromatin interaction
ENSG00000022840	Chromatin interaction
ENSG00000200795	Chromatin interaction
ENSG00000089157	Chromatin interaction
ENSG00000241030	Chromatin interaction
ENSG00000110871	Chromatin interaction
ENSG00000135124	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10849755	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1167695	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1167700	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1167703	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1167725	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1167726	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12307148	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12310837	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1614223	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1622884	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1671767	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1671770	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17431717	0.93[EUR][1000 genomes]
rs1794748	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1794749	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2235222	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2673618	0.82[EUR][1000 genomes]
rs4347449	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs550876	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs563920	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs567156	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580016	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs588132	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs591992	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs614226	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs616157	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61945858	0.91[AMR][1000 genomes]
rs61945873	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs640350	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7137953	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7174	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73405622	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs787824	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs787827	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs787832	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7956998	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7972244	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9668213	0.85[ASN][1000 genomes]
rs9888315	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1167727	POP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120935200-120966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:120935600-120966200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr12:120936400-120966000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr12:120936400-120966200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:120937200-120966000	Weak transcription	Psoas Muscle	Psoas
6	chr12:120942800-120966200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:120943000-120966200	Weak transcription	Fetal Heart	heart
8	chr12:120947200-120966000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr12:120948600-120966000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:120951600-120965600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:120953600-120966200	Weak transcription	Brain Angular Gyrus	brain
12	chr12:120954000-120965800	Weak transcription	Small Intestine	intestine
13	chr12:120954200-120966000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr12:120954200-120966200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr12:120954200-120966600	Weak transcription	Spleen	Spleen
16	chr12:120954400-120966000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr12:120954400-120966000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr12:120954400-120966200	Weak transcription	Gastric	stomach
19	chr12:120954600-120966000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr12:120954600-120966000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr12:120954600-120966000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr12:120954600-120966000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr12:120954600-120966000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr12:120954600-120966000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:120954600-120966000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr12:120954600-120966200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:120954600-120966200	Weak transcription	Esophagus	oesophagus
28	chr12:120954600-120966200	Weak transcription	Pancreas	Pancrea
29	chr12:120954600-120966200	Weak transcription	Right Ventricle	heart
30	chr12:120954800-120966000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr12:120954800-120966000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr12:120954800-120966000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr12:120954800-120966000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr12:120954800-120966000	Weak transcription	Primary B cells from cord blood	blood
35	chr12:120954800-120966000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr12:120954800-120966000	Weak transcription	Colon Smooth Muscle	Colon
37	chr12:120954800-120966000	Weak transcription	Fetal Thymus	thymus
38	chr12:120954800-120966000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr12:120954800-120966000	Weak transcription	GM12878-XiMat	blood
40	chr12:120954800-120966000	Weak transcription	HSMM	muscle
41	chr12:120954800-120966000	Weak transcription	HSMMtube	muscle
42	chr12:120954800-120966200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr12:120954800-120966200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr12:120954800-120966200	Weak transcription	Aorta	Aorta
45	chr12:120954800-120966200	Weak transcription	Fetal Brain Male	brain
46	chr12:120954800-120966200	Weak transcription	Fetal Intestine Large	intestine
47	chr12:120954800-120966200	Weak transcription	Lung	lung
48	chr12:120954800-120966200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr12:120955000-120966000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr12:120955000-120966000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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