Variant report

Variant	rs11677402
Chromosome Location	chr2:74154975-74154976
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:74153966..74155499-chr2:74229025..74232283,3	K562	blood:
2	chr2:74153590..74155495-chr2:74346048..74348829,2	MCF-7	breast:
3	chr2:74154400..74156910-chr2:74330395..74332321,2	MCF-7	breast:
4	chr2:74153687..74156890-chr2:74206451..74210129,3	K562	blood:
5	chr2:74154565..74157356-chr2:74168473..74170629,2	K562	blood:
6	chr2:74151187..74158039-chr2:74203173..74216266,29	MCF-7	breast:
7	chr2:74154411..74157199-chr2:74180603..74183245,2	MCF-7	breast:
8	chr2:74152462..74158334-chr2:74210550..74216243,8	K562	blood:
9	chr2:74151695..74161558-chr2:74205273..74215127,19	K562	blood:
10	chr2:74154635..74156653-chr2:74182624..74185840,3	K562	blood:
11	chr2:74153007..74155466-chr2:74228011..74231907,5	K562	blood:
12	chr2:74147649..74157677-chr2:74203379..74217813,34	MCF-7	breast:
13	chr2:74005698..74008068-chr2:74153454..74156032,2	K562	blood:
14	chr2:74154240..74155879-chr2:74273666..74276557,3	K562	blood:
15	chr2:74054349..74056665-chr2:74153840..74155868,2	K562	blood:
16	chr2:74152943..74155577-chr2:74424141..74426377,3	K562	blood:
17	chr2:74154202..74156719-chr2:74161664..74163297,2	MCF-7	breast:
18	chr2:74152943..74155577-chr2:74424141..74426427,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000235499	Chromatin interaction
ENSG00000237883	Chromatin interaction
ENSG00000124356	Chromatin interaction
ENSG00000065911	Chromatin interaction
ENSG00000257800	Chromatin interaction
ENSG00000255989	Chromatin interaction
ENSG00000187605	Chromatin interaction
ENSG00000144048	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11683738	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62151970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:74153000-74155000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:74153200-74155600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:74153400-74155000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:74153400-74155000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:74153400-74155000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr2:74153400-74155000	Active TSS	Primary T cells fromperipheralblood	blood
7	chr2:74153400-74155000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:74153400-74155000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:74153400-74155000	Active TSS	Colon Smooth Muscle	Colon
10	chr2:74153400-74155000	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr2:74153400-74155000	Active TSS	Fetal Thymus	thymus
12	chr2:74153400-74155000	Active TSS	K562	blood
13	chr2:74153400-74155000	Active TSS	NHDF-Ad	bronchial
14	chr2:74153400-74155000	Active TSS	NHLF	lung
15	chr2:74153400-74155200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr2:74153400-74155200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:74153600-74155000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr2:74153600-74155000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:74153600-74155000	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr2:74153600-74155000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:74153600-74155000	Active TSS	Muscle Satellite Cultured Cells	--
22	chr2:74153600-74155000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr2:74153600-74155000	Active TSS	A549	lung
24	chr2:74153600-74155200	Active TSS	H1 Cell Line	embryonic stem cell
25	chr2:74153600-74155200	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr2:74153600-74155200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr2:74153600-74155200	Active TSS	Fetal Brain Male	brain
28	chr2:74153600-74155600	Active TSS	GM12878-XiMat	blood
29	chr2:74154000-74155000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:74154000-74155200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:74154000-74155200	Active TSS	Psoas Muscle	Psoas
32	chr2:74154200-74155200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
33	chr2:74154200-74155200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr2:74154200-74155200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:74154200-74155200	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr2:74154200-74155200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr2:74154400-74155000	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr2:74154400-74155000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr2:74154400-74155000	Active TSS	Right Atrium	heart
40	chr2:74154400-74155000	Weak transcription	Small Intestine	intestine
41	chr2:74154400-74155200	Flanking Active TSS	Primary T cells from cord blood	blood
42	chr2:74154400-74155200	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr2:74154400-74155200	Flanking Active TSS	Osteobl	bone
44	chr2:74154400-74155400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:74154400-74155400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr2:74154400-74155400	Weak transcription	Spleen	Spleen
47	chr2:74154400-74155600	Weak transcription	Esophagus	oesophagus
48	chr2:74154400-74155600	Weak transcription	Gastric	stomach
49	chr2:74154600-74155000	Flanking Active TSS	Thymus	Thymus
50	chr2:74154600-74155000	Active TSS	HepG2	liver

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