Variant report

Variant	rs11677419
Chromosome Location	chr2:73760643-73760644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:73759257..73763158-chr2:73774216..73777787,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35062203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428051	chr2:73717032-74030067	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2757806	chr2:73717032-74078592	Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	esv2759060	chr2:73717032-74078592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv874267	chr2:73717656-73857002	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73731800-73807600	Weak transcription	Hela-S3	cervix
2	chr2:73736400-73761600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:73741000-73767400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:73744200-73799800	Weak transcription	NH-A	brain
5	chr2:73744600-73764400	Weak transcription	HSMM	muscle
6	chr2:73746000-73765200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr2:73747800-73786800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr2:73748000-73762000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:73752600-73762600	Weak transcription	Fetal Kidney	kidney
10	chr2:73754600-73762000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr2:73756000-73766800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:73756400-73765000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:73756800-73764000	Weak transcription	Fetal Brain Male	brain
14	chr2:73757000-73760800	Strong transcription	Primary T cells from cord blood	blood
15	chr2:73757000-73764200	Weak transcription	K562	blood
16	chr2:73757000-73764600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:73757600-73760800	Strong transcription	Ovary	ovary
18	chr2:73757800-73760800	Strong transcription	Left Ventricle	heart
19	chr2:73757800-73764400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr2:73757800-73764600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr2:73758000-73765000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:73758000-73799800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr2:73758200-73760800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr2:73758200-73760800	Strong transcription	Fetal Intestine Large	intestine
25	chr2:73758200-73762000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr2:73758200-73764200	Strong transcription	Dnd41	blood
27	chr2:73758200-73764400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr2:73758200-73764400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr2:73758200-73764400	Weak transcription	HepG2	liver
30	chr2:73758200-73765000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr2:73758200-73766000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr2:73758200-73785800	Weak transcription	Brain Substantia Nigra	brain
33	chr2:73758200-73800200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr2:73758400-73760800	Strong transcription	Fetal Brain Female	brain
35	chr2:73758400-73761000	Weak transcription	Spleen	Spleen
36	chr2:73758400-73764800	Weak transcription	Small Intestine	intestine
37	chr2:73758400-73765000	Weak transcription	Brain Hippocampus Middle	brain
38	chr2:73758400-73786800	Weak transcription	Brain Angular Gyrus	brain
39	chr2:73758600-73761800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr2:73758600-73763800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr2:73758800-73760800	Strong transcription	Primary hematopoietic stem cells	blood
42	chr2:73758800-73761800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr2:73758800-73764000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:73759000-73761000	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:73759000-73761000	Weak transcription	Esophagus	oesophagus
46	chr2:73759000-73761200	Weak transcription	Osteobl	bone
47	chr2:73759200-73760800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
48	chr2:73759400-73762000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr2:73759400-73762600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr2:73759400-73765200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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