Variant report

Variant	rs11677990
Chromosome Location	chr2:128150249-128150250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr2:128150134-128150303	MCF10A-Er-Src	breast:	n/a	n/a
2	RCOR1	chr2:128150116-128150910	K562	blood:	n/a	n/a
3	JUND	chr2:128150105-128150690	K562	blood:	n/a	n/a
4	CBX3	chr2:128150096-128150737	K562	blood:	n/a	n/a
5	EP300	chr2:128150071-128150739	K562	blood:	n/a	n/a
6	IRF1	chr2:128150096-128150798	K562	blood:	n/a	n/a
7	MAFF	chr2:128150045-128150784	K562	blood:	n/a	n/a
8	FOS	chr2:128150135-128150273	MCF10A-Er-Src	breast:	n/a	n/a
9	MAFK	chr2:128150046-128150795	K562	blood:	n/a	n/a
10	ARID3A	chr2:128150180-128150732	K562	blood:	n/a	n/a
11	FOS	chr2:128150074-128150357	MCF10A-Er-Src	breast:	n/a	n/a
12	MAFK	chr2:128150133-128150264	HepG2	liver:	n/a	n/a
13	MAFK	chr2:128150091-128150444	IMR90	lung:	n/a	n/a
14	FOS	chr2:128150059-128150285	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:128143573..128147652-chr2:128148684..128152903,5	K562	blood:
2	chr2:128145874..128147650-chr2:128148789..128150461,2	MCF-7	breast:
3	chr2:128142915..128147569-chr2:128148942..128152292,5	K562	blood:

No data

Variant related genes	Relation type
MAP3K2	TF binding region
ENSG00000236682	Chromatin interaction
ENSG00000169967	Chromatin interaction

rs_ID	r²[population]
rs4150443	1.00[AMR][1000 genomes]

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128146000-128158400	Weak transcription	Ovary	ovary
2	chr2:128146200-128150600	Enhancers	Fetal Thymus	thymus
3	chr2:128146400-128150400	Enhancers	Primary B cells from peripheral blood	blood
4	chr2:128146400-128150400	Weak transcription	Aorta	Aorta
5	chr2:128146400-128155200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:128146400-128165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:128146600-128150600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr2:128146600-128150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:128146600-128150800	Weak transcription	Fetal Muscle Leg	muscle
10	chr2:128146600-128152000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:128146600-128152000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:128146600-128154200	Weak transcription	Brain Germinal Matrix	brain
13	chr2:128146600-128155000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:128146600-128155000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:128146600-128155200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:128146600-128155200	Weak transcription	Esophagus	oesophagus
17	chr2:128146600-128155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:128146600-128155400	Weak transcription	Brain Hippocampus Middle	brain
19	chr2:128146600-128155400	Weak transcription	Brain Substantia Nigra	brain
20	chr2:128146600-128155400	Weak transcription	Placenta	Placenta
21	chr2:128146600-128155400	Weak transcription	Spleen	Spleen
22	chr2:128146600-128155600	Weak transcription	Brain Anterior Caudate	brain
23	chr2:128146600-128155600	Weak transcription	Colonic Mucosa	Colon
24	chr2:128146600-128157200	Weak transcription	Fetal Stomach	stomach
25	chr2:128146600-128162600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr2:128146800-128150400	Weak transcription	HSMMtube	muscle
27	chr2:128146800-128151800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr2:128146800-128151800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr2:128146800-128158200	Weak transcription	Small Intestine	intestine
30	chr2:128147000-128155000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr2:128148000-128154000	Weak transcription	Primary T cells from cord blood	blood
32	chr2:128148400-128150600	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr2:128148400-128150600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr2:128148600-128155000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr2:128148600-128155200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr2:128148800-128152000	Weak transcription	Liver	Liver
37	chr2:128148800-128155200	Weak transcription	GM12878-XiMat	blood
38	chr2:128148800-128155400	Weak transcription	HepG2	liver
39	chr2:128149000-128155200	Weak transcription	Fetal Intestine Large	intestine
40	chr2:128149400-128150800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr2:128149600-128151000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr2:128149600-128151000	Enhancers	Muscle Satellite Cultured Cells	--
43	chr2:128149600-128151000	Enhancers	NH-A	brain
44	chr2:128149800-128150400	Enhancers	HSMM	muscle
45	chr2:128149800-128150600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:128149800-128150800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr2:128149800-128150800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr2:128149800-128151000	Enhancers	Osteobl	bone
49	chr2:128149800-128151200	Weak transcription	Primary B cells from cord blood	blood
50	chr2:128150000-128150800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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