Variant report

Variant	rs116789829
Chromosome Location	chr10:4555499-4555500
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr10:4554618-4555615	SK-N-SH	brain:	n/a	n/a
2	RAD21	chr10:4554942-4555501	A549	lung:	n/a	n/a
3	CTCF	chr10:4555032-4555523	HCT-116	colon:	n/a	chr10:4555398-4555407
4	TCF12	chr10:4554683-4555618	SK-N-SH	brain:	n/a	n/a
5	EP300	chr10:4554577-4555555	SK-N-SH	brain:	n/a	n/a
6	RAD21	chr10:4554904-4555561	HCT-116	colon:	n/a	n/a
7	NFIC	chr10:4554557-4555546	SK-N-SH	brain:	n/a	chr10:4554972-4554989
8	SMC3	chr10:4554822-4555635	SK-N-SH	brain:	n/a	chr10:4555394-4555408
9	CTCF	chr10:4554957-4555509	MCF-7	breast:	n/a	chr10:4555398-4555407
10	RAD21	chr10:4554910-4555542	ECC-1	luminal epithelium:	n/a	n/a
11	RAD21	chr10:4554886-4555556	A549	lung:	n/a	n/a
12	CTCF	chr10:4554754-4555536	A549	lung:	n/a	chr10:4555398-4555407
13	CTCF	chr10:4554878-4555520	HCT-116	colon:	n/a	chr10:4555398-4555407
14	CHD1	chr10:4554749-4555515	IMR90	lung:	n/a	n/a
15	GATA3	chr10:4554612-4555620	SK-N-SH	brain:	n/a	n/a
16	CTCF	chr10:4554833-4555599	SK-N-SH	brain:	n/a	chr10:4555398-4555407
17	RAD21	chr10:4554581-4555529	SK-N-SH	brain:	n/a	n/a
18	PBX3	chr10:4554804-4555530	SK-N-SH	brain:	n/a	n/a
19	PBX3	chr10:4554706-4555551	SK-N-SH	brain:	n/a	n/a
20	RAD21	chr10:4554819-4555531	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:4554841..4555595-chr10:4693003..4693874,4	MCF-7	breast:
2	chr10:4216515..4217122-chr10:4555119..4555688,2	MCF-7	breast:
3	chr10:4554517..4555692-chr10:4698473..4699407,4	MCF-7	breast:
4	chr10:4555087..4556892-chr10:4807552..4809332,2	MCF-7	breast:
5	chr10:4554964..4555693-chr10:4698445..4699397,2	MCF-7	breast:
6	chr10:4554767..4555670-chr10:4691719..4692590,2	MCF-7	breast:

Variant related genes	Relation type
RNU6-163P	TF binding region
ENSG00000231298	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1041785	chr10:4507158-4564194	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv522046	chr10:4538492-4570425	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv549862	chr10:4554018-4593307	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1040910	chr10:4554674-4606939	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4552000-4556600	Weak transcription	Fetal Thymus	thymus
2	chr10:4553200-4558400	Enhancers	NHDF-Ad	bronchial
3	chr10:4553600-4555800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:4554200-4557200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:4554600-4555600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:4554600-4556200	Enhancers	Fetal Heart	heart
7	chr10:4554800-4556600	Enhancers	Left Ventricle	heart
8	chr10:4555000-4556000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr10:4555000-4556400	Enhancers	Colon Smooth Muscle	Colon
10	chr10:4555000-4558400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:4555200-4556400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:4555200-4556400	Weak transcription	NHLF	lung
13	chr10:4555200-4556600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:4555200-4558000	Enhancers	Spleen	Spleen
15	chr10:4555400-4555600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:4555400-4555800	Enhancers	Adipose Nuclei	Adipose
17	chr10:4555400-4555800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:4555400-4556000	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:4555400-4556400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:4555400-4556400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:4555400-4556800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:4555400-4561800	Weak transcription	Pancreas	Pancrea

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