Variant report

Variant	rs11679127
Chromosome Location	chr2:21662273-21662274
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10182529	0.86[AFR][1000 genomes]
rs10187591	0.90[AFR][1000 genomes]
rs10188686	0.90[AFR][1000 genomes]
rs11693815	0.90[AFR][1000 genomes]
rs12467135	0.89[AFR][1000 genomes]
rs13027723	0.90[AFR][1000 genomes]
rs13383973	0.91[AFR][1000 genomes]
rs13420091	0.85[AFR][1000 genomes]
rs13424669	0.85[AFR][1000 genomes]
rs13426350	0.82[AFR][1000 genomes]
rs2338024	0.88[AFR][1000 genomes]
rs72791846	0.81[AMR][1000 genomes]
rs9973644	0.88[AFR][1000 genomes]
rs9973753	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21646800-21690600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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