Variant report

Variant	rs11680105
Chromosome Location	chr2:231500949-231500950
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10169182	0.99[ASN][1000 genomes]
rs10804371	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11885648	0.98[ASN][1000 genomes]
rs11885764	0.98[ASN][1000 genomes]
rs60486756	0.97[ASN][1000 genomes]
rs62194825	0.94[ASN][1000 genomes]
rs62194827	0.91[ASN][1000 genomes]
rs62194828	0.85[ASN][1000 genomes]
rs7369374	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527319	chr2:231492816-231501467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231500600-231501400	Enhancers	GM12878-XiMat	blood
2	chr2:231500600-231502200	Enhancers	Primary B cells from peripheral blood	blood
3	chr2:231500600-231502200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr2:231500800-231507000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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